; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014076 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014076
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:55110831..55111253
RNA-Seq ExpressionLag0014076
SyntenyLag0014076
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-1338.24Show/hide
Query:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLKIKTEE
        KR +    ++   K ++DPK LPAT+   +KQ+MEE  Y  LILN++D+VLRQ+ +E T ++I  KL ALY KKD+PSK+++R+ +     N  + KT  
Subjt:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLKIKTEE

Query:  NAADMMTKVVT---------RAKFEHCLKLLSLTDT
           D   K+           RA+ E  + + SL DT
Subjt:  NAADMMTKVVT---------RAKFEHCLKLLSLTDT
KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.9e-1752.33Show/hide
Query:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
        KR      +++  KALEDPK LPATLT  E++T+EEVAY+TLI+N++D+VLRQ+ +ETT F  W KL++LY KKD+P+K+ +++ +
Subjt:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]7.7e-1753.41Show/hide
Query:  GVKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
        G KR      +++  KALEDPK L ATLT  E++T+EEVAY TLI+N++++VLRQI +ETT F  W KL++LY KKD+P+K+ +RD +
Subjt:  GVKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.2e-1553.85Show/hide
Query:  NKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
        +++  KALEDPK LPATLT  E++T+EEVAY+TLI+N++D+VLRQ+ +ETT F  W  L++LY KKD+ +K+ +R+ +
Subjt:  NKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
XP_038902453.1 uncharacterized protein LOC120089100 [Benincasa hispida]2.3e-1646.88Show/hide
Query:  VKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLK
        + R ++    ++  +A+EDPKT P  +T E+KQ MEEVAY  LILN+S+SVLRQ+  E T +++W KL+ LY+KKDVP+K ++R+ +     N LK
Subjt:  VKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLK
TrEMBL top hitse value%identityAlignment
A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-948.6e-1438.24Show/hide
Query:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLKIKTEE
        KR +    ++   K ++DPK LPAT+   +KQ+MEE  Y  LILN++D+VLRQ+ +E T ++I  KL ALY KKD+PSK+++R+ +     N  + KT  
Subjt:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLKIKTEE

Query:  NAADMMTKVVT---------RAKFEHCLKLLSLTDT
           D   K+           RA+ E  + + SL DT
Subjt:  NAADMMTKVVT---------RAKFEHCLKLLSLTDT
A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-1752.33Show/hide
Query:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
        KR      +++  KALEDPK LPATLT  E++T+EEVAY+TLI+N++D+VLRQ+ +ETT F  W KL++LY KKD+P+K+ +++ +
Subjt:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass3.8e-1753.41Show/hide
Query:  GVKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
        G KR      +++  KALEDPK L ATLT  E++T+EEVAY TLI+N++++VLRQI +ETT F  W KL++LY KKD+P+K+ +RD +
Subjt:  GVKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-1553.85Show/hide
Query:  NKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
        +++  KALEDPK LPATLT  E++T+EEVAY+TLI+N++D+VLRQ+ +ETT F  W  L++LY KKD+ +K+ +R+ +
Subjt:  NKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAI
A0A5D3DWH4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-1337.93Show/hide
Query:  KRSRQFYCNKRHFKALEDPK------------TLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEK
        KR +    ++   KA++DPK             LPAT+T  +KQ+MEE  Y  LILN++D+V RQ+ +E T ++IW KL ALY KKD+PSK+++RD   K
Subjt:  KRSRQFYCNKRHFKALEDPK------------TLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEK

Query:  G------TANLLKIKTEENAADMMTKVVTRAKFEHCLKLLSLTDT
                 NL + K   N  + + + + RA+ E  + + SL DT
Subjt:  G------TANLLKIKTEENAADMMTKVVTRAKFEHCLKLLSLTDT
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-0430.12Show/hide
Query:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLR
        +R R     +   K L+     P T+  E+   ++E A + + L++SD V+  I DE T   IW +L++LY+ K + +K++L+
Subjt:  KRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLR
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0342.31Show/hide
Query:  KDVPSKIH-LRDAIEKGTANLLKIKTEENAADMMTKVVTRAKFEHCLKLLSL
        K +  + H +R+ ++  +  +LKI T EN ADM+TKVV R KFE C +L+ +
Subjt:  KDVPSKIH-LRDAIEKGTANLLKIKTEENAADMMTKVVTRAKFEHCLKLLSL
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGGAGATTTTGGTTTATGGTGTAAAAAGATCAAGGCAATTCTATTGCAACAAAAGGCACTTTAAGGCCTTGGAGGATCCCAAAACTCTACCTGCTACACTCAC
ACATGAAGAAAAACAAACAATGGAGGAAGTAGCTTACAACACTCTTATCTTGAATGTTTCTGATAGTGTTCTGAGACAAATTAGAGATGAAACTACAGTATTTGACATTT
GGAGAAAATTGCAAGCCCTATATATTAAGAAAGATGTACCCAGCAAAATTCACCTCAGAGATGCAATTGAAAAGGGAACAGCAAATTTGTTGAAAATTAAAACTGAAGAA
AACGCAGCAGACATGATGACTAAAGTAGTGACGCGTGCCAAGTTTGAGCATTGTCTGAAGCTGCTCAGCTTGACCGACACTCCAAGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTGGAGATTTTGGTTTATGGTGTAAAAAGATCAAGGCAATTCTATTGCAACAAAAGGCACTTTAAGGCCTTGGAGGATCCCAAAACTCTACCTGCTACACTCAC
ACATGAAGAAAAACAAACAATGGAGGAAGTAGCTTACAACACTCTTATCTTGAATGTTTCTGATAGTGTTCTGAGACAAATTAGAGATGAAACTACAGTATTTGACATTT
GGAGAAAATTGCAAGCCCTATATATTAAGAAAGATGTACCCAGCAAAATTCACCTCAGAGATGCAATTGAAAAGGGAACAGCAAATTTGTTGAAAATTAAAACTGAAGAA
AACGCAGCAGACATGATGACTAAAGTAGTGACGCGTGCCAAGTTTGAGCATTGTCTGAAGCTGCTCAGCTTGACCGACACTCCAAGTGATTGA
Protein sequenceShow/hide protein sequence
MAVEILVYGVKRSRQFYCNKRHFKALEDPKTLPATLTHEEKQTMEEVAYNTLILNVSDSVLRQIRDETTVFDIWRKLQALYIKKDVPSKIHLRDAIEKGTANLLKIKTEE
NAADMMTKVVTRAKFEHCLKLLSLTDTPSD