; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014127 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014127
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosome biogenesis protein
Genome locationchr1:55472080..55473868
RNA-Seq ExpressionLag0014127
SyntenyLag0014127
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR028160 - Ribosome biogenesis protein Slx9-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]5.0e-6587.9Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT
        MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITK KL RRKRDLKAFDL+ LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGT
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT

Query:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        VLNHP FQADPL AIHLHLESTQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Subjt:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]2.9e-6587.9Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT
        MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGT
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT

Query:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        VLNHP FQADPL AIHLHL+STQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Subjt:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]3.8e-6587.9Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT
        MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ LSEFLPGLK PK+KT   ELKVN KSRLKFVLKETKQMGT
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT

Query:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        VLNHP FQADPL AIHLHLESTQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Subjt:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]1.6e-6689.17Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT
        MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGT
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT

Query:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        VLNHP FQADPL AIHLHLESTQPVEEPKKKKTN+NGSKKRKEK+SK TA+PSSME+
Subjt:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]1.2e-6186.08Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKL-GRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG
        MGKPVSRSDSKSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK   RRKRDLKAFDLSTLSEFLPGL+APK+K  A ELK+N KSRLKF+LKE KQMG
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKL-GRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG

Query:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        TVLNHPVFQADPLRAI LHLE TQP+EEP KKKTNKNGSKKRKEK+SK + RPSSME+
Subjt:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein8.1e-6183.54Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKK-LGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKK   RRKRDLKAFDLSTLSEFLPGL+A K+K  A ELK+N KSRLKF+LKE KQMG
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKK-LGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG

Query:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        TVLNHPVFQADPLRA+ LHLE TQP+EEPKKKK NKNGSKKRKEK+SK +A+PSSME+
Subjt:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like4.0e-6083.54Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKK-LGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKK   RRKRDLKAFDLSTLSEFLPGL+A K+K  A ELK+N KSRLKF+LKE KQMG
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKK-LGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG

Query:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        TVLNHPVFQADPLRA+ LHLE TQP EEPKKKK NKNGSKKRKEK+ K +ARPSSME+
Subjt:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X21.1e-5780.13Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGR-RKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG
        MGKPVSRSDSKSKAERKF+KKVQFYERVGET+  LNAQKTI+K    R RK+ LKAFDL+TLSEFLPGL+APK+K+ A ELKVN KSRLKF+LKE KQMG
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGR-RKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMG

Query:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSM
        TVLNHP FQADPL+AIHLHLESTQPVEEPKKK TNKNGSKKRKEK+ K +A P  M
Subjt:  TVLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like1.4e-6587.9Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT
        MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ LSEFLPGLKAPK+KT   ELKVN KSRLKFVLKETKQMGT
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT

Query:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        VLNHP FQADPL AIHLHL+STQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Subjt:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like1.9e-6587.9Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT
        MGKP SRSDSKSKAERKFEKK+QFYERVGETIATLNAQKTITKKKL RRKRDLKAFDL+ LSEFLPGLK PK+KT   ELKVN KSRLKFVLKETKQMGT
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGT

Query:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI
        VLNHP FQADPL AIHLHLESTQPVEE KKKKTN+NGSKKRKEK+SK TA+PSSME+
Subjt:  VLNHPVFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein4.6e-3254Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTI-TKKKLGRRKRDLKAFDLSTLSEFLPGLKA-PKEKTPAPELKVNSKSRLKFVLKETKQM
        MGKP   S+  +K+++KFEKK+QFY +V +T+ +L+ QK I  KKK+  R++ LKA+DL+ LSEFLP   A  K   PAPELK+N K R K VL E +++
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTI-TKKKLGRRKRDLKAFDLSTLSEFLPGLKA-PKEKTPAPELKVNSKSRLKFVLKETKQM

Query:  GTVLNHPVFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKRSK
          VL+HP FQADP+ +I  HL S Q PVEE  KKKTN NGSKKR +K+ K
Subjt:  GTVLNHPVFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKRSK

AT2G01640.2 unknown protein4.6e-3254Show/hide
Query:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTI-TKKKLGRRKRDLKAFDLSTLSEFLPGLKA-PKEKTPAPELKVNSKSRLKFVLKETKQM
        MGKP   S+  +K+++KFEKK+QFY +V +T+ +L+ QK I  KKK+  R++ LKA+DL+ LSEFLP   A  K   PAPELK+N K R K VL E +++
Subjt:  MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTI-TKKKLGRRKRDLKAFDLSTLSEFLPGLKA-PKEKTPAPELKVNSKSRLKFVLKETKQM

Query:  GTVLNHPVFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKRSK
          VL+HP FQADP+ +I  HL S Q PVEE  KKKTN NGSKKR +K+ K
Subjt:  GTVLNHPVFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKRSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACCAGTCTCTCGGTCGGATTCGAAATCTAAAGCCGAGCGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGC
TCAAAAGACTATTACTAAGAAGAAACTTGGAAGACGCAAAAGGGATTTGAAGGCTTTCGATCTTTCTACCCTATCAGAGTTTCTTCCTGGATTGAAGGCTCCTAAAGAAA
AAACTCCTGCACCCGAGTTAAAAGTAAATAGCAAGTCTAGGCTAAAGTTTGTATTAAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGTATTCCAGGCAGAC
CCATTGAGAGCTATTCATCTGCATTTAGAGAGCACACAACCAGTTGAGGAACCAAAGAAAAAGAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAAAGGTCCAA
AGGCACCGCAAGACCTTCATCCATGGAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAACCAGTCTCTCGGTCGGATTCGAAATCTAAAGCCGAGCGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGC
TCAAAAGACTATTACTAAGAAGAAACTTGGAAGACGCAAAAGGGATTTGAAGGCTTTCGATCTTTCTACCCTATCAGAGTTTCTTCCTGGATTGAAGGCTCCTAAAGAAA
AAACTCCTGCACCCGAGTTAAAAGTAAATAGCAAGTCTAGGCTAAAGTTTGTATTAAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGTATTCCAGGCAGAC
CCATTGAGAGCTATTCATCTGCATTTAGAGAGCACACAACCAGTTGAGGAACCAAAGAAAAAGAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAAAGGTCCAA
AGGCACCGCAAGACCTTCATCCATGGAGATATGA
Protein sequenceShow/hide protein sequence
MGKPVSRSDSKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKLGRRKRDLKAFDLSTLSEFLPGLKAPKEKTPAPELKVNSKSRLKFVLKETKQMGTVLNHPVFQAD
PLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKRSKGTARPSSMEI