CuGenDBv2

Gene ID	Lag0014167
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	WD_REPEATS_REGION domain-containing protein
Genome location	chr1:55853288..55860046
RNA-Seq Expression	Lag0014167
Synteny	Lag0014167
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052415.1 DDB1- and CUL4-associated factor 4-like isoform X1 [Cucumis melo var. makuwa]

1.1e-56

91.94

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTNMGAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSLVSLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

XP_008439422.1 PREDICTED: uncharacterized protein LOC103484236 isoform X1 [Cucumis melo]

1.1e-56

91.94

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTNMGAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSLVSLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

XP_008439424.1 PREDICTED: uncharacterized protein LOC103484236 isoform X2 [Cucumis melo]

1.1e-56

91.94

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTNMGAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSLVSLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

XP_022146543.1 uncharacterized protein LOC111015736 isoform X2 [Momordica charantia]

6.9e-56

88.8

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPADRNSRTSSQQWFKLTGNIFPSCTVKMPS
        GT+MGAASVDMGTGRISWILHGKSDVFALQLIHSE VVLCGLRNG+I+T+DTRERQEV KRL RHRIPY P  RNSRTSSQQWFKLTGNIFPSCTVKMPS
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPADRNSRTSSQQWFKLTGNIFPSCTVKMPS

Query:  SISSLVSLQFDDRYFLASSMEGSDR
        SISSL SLQFDDRYFLASSM+G+ R
Subjt:  SISSLVSLQFDDRYFLASSMEGSDR

XP_031743496.1 uncharacterized protein LOC101220880 isoform X2 [Cucumis sativus]

9.0e-56

90.32

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTN+GAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSL+SLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMD9 WD_REPEATS_REGION domain-containing protein

4.4e-56

90.32

Show/hide

Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTN+GAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSL+SLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

A0A1S3AYQ0 uncharacterized protein LOC103484236 isoform X1

5.2e-57

91.94

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTNMGAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSLVSLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

A0A1S3AZD8 uncharacterized protein LOC103484236 isoform X2

5.2e-57

91.94

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTNMGAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSLVSLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

A0A5A7UFC1 DDB1-and CUL4-associated factor 4-like isoform X1

5.2e-57

91.94

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Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP
        GTNMGAASVDMGTGRISWILHGKSD+FALQLIHSENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPY P D RNSRTSSQQW+KLTGNIFPSCTVKMP
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPAD-RNSRTSSQQWFKLTGNIFPSCTVKMP

Query:  SSISSLVSLQFDDRYFLASSMEGS
        SSISSLVSLQFDDRYFLASSM+GS
Subjt:  SSISSLVSLQFDDRYFLASSMEGS

A0A6J1CYV5 uncharacterized protein LOC111015736 isoform X2

3.4e-56

88.8

Show/hide

Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPADRNSRTSSQQWFKLTGNIFPSCTVKMPS
        GT+MGAASVDMGTGRISWILHGKSDVFALQLIHSE VVLCGLRNG+I+T+DTRERQEV KRL RHRIPY P  RNSRTSSQQWFKLTGNIFPSCTVKMPS
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPADRNSRTSSQQWFKLTGNIFPSCTVKMPS

Query:  SISSLVSLQFDDRYFLASSMEGSDR
        SISSL SLQFDDRYFLASSM+G+ R
Subjt:  SISSLVSLQFDDRYFLASSMEGSDR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G17370.1 Transducin/WD40 repeat-like superfamily protein

7.4e-24

44.37

Show/hide

Query:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQ-EVFKRLSRHRIPYFPADRNSRTSS-QQWF--------------
        GT++GA  VD+ TG  S+ L  KSDVFALQ   S N+V CGLRNG I+++D RER    F RL+RH+I Y  + +   TS+ +QWF              
Subjt:  GTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQ-EVFKRLSRHRIPYFPADRNSRTSS-QQWF--------------

Query:  ---KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGS
           +L GNI PS  + MPSS++ L +L+  D+Y +ASSM+G+
Subjt:  ---KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGS

Sequences

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CDS sequence

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ATGGTAACTGGTTACTGGTTAGTATATGAAAAAGGTGAAGATTTCCTTGTGGAGCGTGTTAGCTGGTTTAAATACCTAGAACAAGGGACGAACATGGGAGCTGCTTCAGT
TGATATGGGAACTGGCAGGATATCATGGATTTTACATGGTAAAAGTGACGTTTTTGCGCTACAACTCATTCATTCGGAAAATGTTGTTCTGTGTGGACTTAGAAATGGCA
TAATTTTGACAATTGATACACGTGAAAGACAGGAAGTATTTAAAAGACTTTCAAGGCATCGAATTCCTTACTTTCCTGCAGATAGAAACTCCAGAACGTCTTCTCAGCAG
TGGTTTAAGCTCACTGGGAACATTTTTCCTTCTTGCACGGTTAAAATGCCTTCATCCATATCAAGTTTGGTGTCACTTCAGTTTGATGACAGATACTTTTTGGCAAGCTC
CATGGAAGGATCGGACCGTGAGGAGCTTGTGCTTATGGTTGAGGGCATTTATGGCCTTGTTAGCTTTGCCACTCTTGTGTTTTGTGACACAATCCCTCATTGGAATTGTC
CTTTTGTTAATGGTGCTGAAATGGAGCTGAGATGGCGAATAATTTTCCTACAAAAAGAATCAAGTCCTAAAAAGGATTGGACATCTTTAATAGAGGTGCTTGACGCATTT
AAGAGTCCAAAGGGCGTGAGAAGCCACTCAGAATCCCTCATTTGTTTTGAACTCTATCTTCCATTCATTCCCTGGTTGGATTTGAATTGGGTGGTAGCTGCTCCTTAA

mRNA sequence

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Protein sequence

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MVTGYWLVYEKGEDFLVERVSWFKYLEQGTNMGAASVDMGTGRISWILHGKSDVFALQLIHSENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYFPADRNSRTSSQQ
WFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSDREELVLMVEGIYGLVSFATLVFCDTIPHWNCPFVNGAEMELRWRIIFLQKESSPKKDWTSLIEVLDAF
KSPKGVRSHSESLICFELYLPFIPWLDLNWVVAAP

Lag0014167 (gene) of Sponge gourd (AG-4) v1 genome