| GenBank top hits | e value | %identity | Alignment |
|---|
| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 2.7e-119 | 40.44 | Show/hide |
Query: LLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAA
+L I KLD G+++GT+ CP + + T +D + N A+ W A DQ LLGW+ NSMT E+A Q++ E S+ LW
Subjt: LLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAA
Query: IQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQ
Q L G +R++ YL+ F RKG MKM DYL MK+ D L AG+PV+T L+ Q L GLD EYNPVV + + ++W ++QA+LL FE R+E
Subjt: IQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQ
Query: TSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRG
+L T+LT++ + N+ + D G+ S NN + + RG++ GGRGRG+ + K CQVCG H + C+ RF+K +S N + G
Subjt: TSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRG
Query: DPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCV
+Q S N+F+AS +V D WY DSGAS+HVT + E+ G + VG+G L I + G+S L K+L+L +IL V
Subjt: DPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCV
Query: PSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRL
P+I KNL+SVSKLA DN + VEF ++CCFVKDK TG V+LKG L DGLY+ G + N V K WHRRL
Subjt: PSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRL
Query: GHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAF
GHP+ KVL+ ++ SC + ++ F FCEACQ+GK H LPF +S S ELVHTD+WGPAP+ ++ GF++YV F+DD+SRF+WIYPLK+K+ + AF
Subjt: GHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAF
Query: THFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
F L +NQFN IK +Q D GGEY + +L G+Q R+S
Subjt: THFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| KYP50444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | 5.1e-118 | 43.46 | Show/hide |
Query: MTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRF
MT EVA Q++ E SQ +W Q L G +R+ +L+ F + RKG +KM +YL MK D+L AGS V+T LV+Q L GLD EYNP+V + +
Subjt: MTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRF
Query: GITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQ--RGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGH
+TW EMQA+LL +E RLE Q + +++LT++ ++++ + N+ G + GRG Q RG GRGRGR + ++ VCQVC K GH
Subjt: GITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQ--RGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGH
Query: TTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNI
CY RFNK + G N + + + + N + N++VASP TV D WY DSGAS+HVT D N + E +G + +TVG+G++L I
Subjt: TTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNI
Query: KSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSI
+ G+S L K+L+L++IL VP I KNL+S+SKL DN ++VEFHD CFVKDK TG +LL+G + DGLY+ G S + V SI
Subjt: KSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSI
Query: ESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLF
K WHR+LGHP+ KVL +++ CN+ E F+FCEACQFGK+H LPF NSVS +LVH+D+WGPAP+ S GF++YVLF
Subjt: ESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLF
Query: LDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
LDD+SRF+WIYPLK+K+ AF F LV+NQFN IKTLQ D GGE+ + ++ G+Q+R S
Subjt: LDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 1.2e-119 | 40.09 | Show/hide |
Query: NQLLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLW
+ +L I +LD G+++G K CP + + A+ D S ++ NP +E W A DQ LLGWL NSMT +A Q++ E S LW
Subjt: NQLLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLW
Query: AAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLE
Q L G +R++ YL+ F RKG MKM DYL MK+ D L AG+P++T L+ Q L GLD EYNPVV + + ++W ++QA+LL FE R+E
Subjt: AAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLE
Query: LQTSLKTSLTISQGTSVNMVSNKDSSGQR-NQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQ
SL T+LT++ + N+ D G R N N + NN+ RG GRGRGR + K CQVCG H + C+ RF+K +S N +
Subjt: LQTSLKTSLTISQGTSVNMVSNKDSSGQR-NQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQ
Query: NRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENI
N S N+F+AS ++ D WY DSGAS+HVT + N E+ G + VG+G L I + G+S L K+L+L +I
Subjt: NRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENI
Query: LCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWH
L VP I KNL+SVSKLA DN + VEF ++CCFVKDK TG +L+G L DGLY+ + +SAY + K WH
Subjt: LCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWH
Query: RRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAM
R+LGHP+ KVL+ +++SCN+ +++F FCEACQ+GK H LPF S S ELVHTD+WGPAP+ S+ GF++YV F+DD++RF+WIYPLK+K+
Subjt: RRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAM
Query: IAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
AF F +V+NQF+ IKT+Q D GGEY + + G+Q R+S
Subjt: IAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 1.3e-113 | 39.4 | Show/hide |
Query: GHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAE
G+++GTK CP DQ TS +T E+INP Y+ W A DQ LLGWL NSMT ++A QV+ E S+ LW Q L G +R+
Subjt: GHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAE
Query: EDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQG
YL+ F K MKM YL MK+ D L AGSP+++ L+ Q L GLD EYNPVV + + I+W + QA+LL FE RL+ Q
Subjt: EDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQG
Query: TSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQ-AQNRGDPRQNGQLSTT
+ N ++ S+ ++N+SG N+ + G G++ RG GRG S +P+CQ+CGK GHT CY RF+K ++ N A+ G
Subjt: TSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQ-AQNRGDPRQNGQLSTT
Query: VQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVS
S ++FVASP D WY DSGAS+HVT + + E G + VG+G L I + G++ L D ++L N+L VP I KNL+SVS
Subjt: VQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVS
Query: KLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESL
KL DN VEF ++ C+VKDK TG LLKG L DGLY+ + + AY + K +WHR+LGHP+ KVLE +
Subjt: KLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESL
Query: VRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQF
++ N+ +++F FCEACQFGK H LPF S S +L+HTD+WGPAP+ S F++YV FLDD+SRF+WI+PLK+K+ + AF F LV+NQF
Subjt: VRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQF
Query: NTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
N IK ++ D GGEY + + G+Q ++S
Subjt: NTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 8.4e-113 | 39.72 | Show/hide |
Query: ITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQEL
I K D G+++GTK CP + + S D+S +++NP ++ W+A DQ LLGWL NSM ++A Q++ E S+ LW Q L
Subjt: ITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQEL
Query: FGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLK
G +++ YL+ F RKG MKM +YL MK+ +D L +GSP++ L+ Q L GLD EYNPVV + + ++W ++QA+LL FE RL+ Q +
Subjt: FGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLK
Query: TSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPN---QAQNRGD
+ LT++ S N + + G + ++ GN R++NF RG + GGRG+GR N K CQVC GHT + C RF++ ++G N +A +G
Subjt: TSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPN---QAQNRGD
Query: PRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVP
S ++FVASP D WY DSGAS+HVT + E+ G + VG+G L I + G++ L TL+L ++L VP
Subjt: PRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVP
Query: SIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLG
I KNL+SVSKL DN +FVEF +CC VKDK TG LLKG L DGLY+ DVS S + CV + K WHR+LG
Subjt: SIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLG
Query: HPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFT
HP+ KVLE +++ CN+ +++F FCEACQFGK H LPF +S S V L+H+D+WGPAP+ S GF++YV F+DD+SRF+WI+PLK+K+ + AF
Subjt: HPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFT
Query: HFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
F L +NQFN IK +Q D GGEY + ++ G+Q R+S
Subjt: HFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.5e-118 | 43.46 | Show/hide |
Query: MTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRF
MT EVA Q++ E SQ +W Q L G +R+ +L+ F + RKG +KM +YL MK D+L AGS V+T LV+Q L GLD EYNP+V + +
Subjt: MTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRF
Query: GITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQ--RGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGH
+TW EMQA+LL +E RLE Q + +++LT++ ++++ + N+ G + GRG Q RG GRGRGR + ++ VCQVC K GH
Subjt: GITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQ--RGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGH
Query: TTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNI
CY RFNK + G N + + + + N + N++VASP TV D WY DSGAS+HVT D N + E +G + +TVG+G++L I
Subjt: TTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNI
Query: KSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSI
+ G+S L K+L+L++IL VP I KNL+S+SKL DN ++VEFHD CFVKDK TG +LL+G + DGLY+ G S + V SI
Subjt: KSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSI
Query: ESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLF
K WHR+LGHP+ KVL +++ CN+ E F+FCEACQFGK+H LPF NSVS +LVH+D+WGPAP+ S GF++YVLF
Subjt: ESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLF
Query: LDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
LDD+SRF+WIYPLK+K+ AF F LV+NQFN IKTLQ D GGE+ + ++ G+Q+R S
Subjt: LDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 5.8e-120 | 40.09 | Show/hide |
Query: NQLLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLW
+ +L I +LD G+++G K CP + + A+ D S ++ NP +E W A DQ LLGWL NSMT +A Q++ E S LW
Subjt: NQLLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLW
Query: AAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLE
Q L G +R++ YL+ F RKG MKM DYL MK+ D L AG+P++T L+ Q L GLD EYNPVV + + ++W ++QA+LL FE R+E
Subjt: AAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLE
Query: LQTSLKTSLTISQGTSVNMVSNKDSSGQR-NQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQ
SL T+LT++ + N+ D G R N N + NN+ RG GRGRGR + K CQVCG H + C+ RF+K +S N +
Subjt: LQTSLKTSLTISQGTSVNMVSNKDSSGQR-NQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQ
Query: NRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENI
N S N+F+AS ++ D WY DSGAS+HVT + N E+ G + VG+G L I + G+S L K+L+L +I
Subjt: NRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENI
Query: LCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWH
L VP I KNL+SVSKLA DN + VEF ++CCFVKDK TG +L+G L DGLY+ + +SAY + K WH
Subjt: LCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWH
Query: RRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAM
R+LGHP+ KVL+ +++SCN+ +++F FCEACQ+GK H LPF S S ELVHTD+WGPAP+ S+ GF++YV F+DD++RF+WIYPLK+K+
Subjt: RRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAM
Query: IAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
AF F +V+NQF+ IKT+Q D GGEY + + G+Q R+S
Subjt: IAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 6.3e-114 | 39.4 | Show/hide |
Query: GHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAE
G+++GTK CP DQ TS +T E+INP Y+ W A DQ LLGWL NSMT ++A QV+ E S+ LW Q L G +R+
Subjt: GHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAE
Query: EDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQG
YL+ F K MKM YL MK+ D L AGSP+++ L+ Q L GLD EYNPVV + + I+W + QA+LL FE RL+ Q
Subjt: EDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQG
Query: TSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQ-AQNRGDPRQNGQLSTT
+ N ++ S+ ++N+SG N+ + G G++ RG GRG S +P+CQ+CGK GHT CY RF+K ++ N A+ G
Subjt: TSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQ-AQNRGDPRQNGQLSTT
Query: VQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVS
S ++FVASP D WY DSGAS+HVT + + E G + VG+G L I + G++ L D ++L N+L VP I KNL+SVS
Subjt: VQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVS
Query: KLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESL
KL DN VEF ++ C+VKDK TG LLKG L DGLY+ + + AY + K +WHR+LGHP+ KVLE +
Subjt: KLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESL
Query: VRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQF
++ N+ +++F FCEACQFGK H LPF S S +L+HTD+WGPAP+ S F++YV FLDD+SRF+WI+PLK+K+ + AF F LV+NQF
Subjt: VRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQF
Query: NTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
N IK ++ D GGEY + + G+Q ++S
Subjt: NTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 1.3e-119 | 40.44 | Show/hide |
Query: LLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAA
+L I KLD G+++GT+ CP + + T +D + N A+ W A DQ LLGW+ NSMT E+A Q++ E S+ LW
Subjt: LLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAA
Query: IQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQ
Q L G +R++ YL+ F RKG MKM DYL MK+ D L AG+PV+T L+ Q L GLD EYNPVV + + ++W ++QA+LL FE R+E
Subjt: IQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQ
Query: TSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRG
+L T+LT++ + N+ + D G+ S NN + + RG++ GGRGRG+ + K CQVCG H + C+ RF+K +S N + G
Subjt: TSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRG
Query: DPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCV
+Q S N+F+AS +V D WY DSGAS+HVT + E+ G + VG+G L I + G+S L K+L+L +IL V
Subjt: DPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCV
Query: PSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRL
P+I KNL+SVSKLA DN + VEF ++CCFVKDK TG V+LKG L DGLY+ G + N V K WHRRL
Subjt: PSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRL
Query: GHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAF
GHP+ KVL+ ++ SC + ++ F FCEACQ+GK H LPF +S S ELVHTD+WGPAP+ ++ GF++YV F+DD+SRF+WIYPLK+K+ + AF
Subjt: GHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAF
Query: THFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
F L +NQFN IK +Q D GGEY + +L G+Q R+S
Subjt: THFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGVQVRLS
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| A0A803PEH4 Uncharacterized protein | 7.9e-117 | 39.35 | Show/hide |
Query: ATMTSVNSSGISALSSG----------NSFSSPPLNQLLNPITSVKLDR--------------------GHLIGTKPCPPKILQASVDRSGPSSSTGTDQ
+T +S +S ++ SS N+F+ P LNQ S+KLDR G+L GT CPP+ +
Subjt: ATMTSVNSSGISALSSG----------NSFSSPPLNQLLNPITSVKLDR--------------------GHLIGTKPCPPKILQASVDRSGPSSSTGTDQ
Query: AATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDN
G T + NP YE W+ DQLL+GWLY+SMT +A +VMG ++ +L ++ L+G S+++ D R + Q RKGS M++YLR K+ ++
Subjt: AATSGGSTTIVVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDN
Query: LGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLE-LQT-SLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFG
L AG P LV+ VL GLD EY +V I+ R TW E+Q LL F+ ++E LQ +L ++ S NM + +++G+ QS N N+ G
Subjt: LGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLE-LQT-SLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFG
Query: RGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSG--PNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWY
G R RGRG G GS ++P CQV GK GHT +CY RF++ + G PN N Q A N + ++FVA+PE + +W+
Subjt: RGFQRGGGRGRGRGRGYGYGSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSG--PNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWY
Query: ADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLT-DGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMV
ADSGAS+H+T+D + +Y G V VG+GS L I +GN L + L L+++L VP IAKNLVSVSKLA DN V +EF+ + C VKDK T V
Subjt: ADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLT-DGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMV
Query: LLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQ--SKVNNSIESACVLSNTVNLVISK-NVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGK
LL G L D LY+ D S+ YQ+ S S++S S T +L+IS+ +V HRRLGHPS+KVL ++ S N+ N C+ACQ+GK
Subjt: LLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQ--SKVNNSIESACVLSNTVNLVISK-NVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGK
Query: SHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCET
+HALPF +S +R S +L+HTDLWGPAP+ SN +Y+ F+DDYSR++W+YPLK K+ A+ AF F ALV+NQF IK+L+SD+GGEY L +T
Subjt: SHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCET
Query: MGVQ
G++
Subjt: MGVQ
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| SwissProt top hits | e value | %identity | Alignment |
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| P0C2I3 Transposon Ty1-DR6 Gag-Pol polyprotein | 4.6e-13 | 29.45 | Show/hide |
Query: HRRLGHPSLKVLESLVRSCNLPTKTNE---------EFKFCEACQFGKS--------HALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLD
HR L H + + + +++ N T NE +++ C C GKS L + NS F+ +HTD++GP N +++ F D
Subjt: HRRLGHPSLKVLESLVRSCNLPTKTNE---------EFKFCEACQFGKS--------HALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLD
Query: DYSRFSWIYPL--KRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTH--IHRLCETMGV
+ ++F W+YPL +R++ + FT A +KNQF S+ +Q D G EYT+ +H+ E G+
Subjt: DYSRFSWIYPL--KRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTH--IHRLCETMGV
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.4e-31 | 23.6 | Show/hide |
Query: EAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYL-RQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVL
E W +D+ + ++ +V ++ + ++ +W ++ L+ ++ + YL +Q++ +L V L G + +L
Subjt: EAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYL-RQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVL
Query: LGLDEEY-NPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGY
L Y N ++ G+ I ++ + LL+ EK + + +L I++G + +S NN+GR RG + R + R
Subjt: LGLDEEY-NPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGY
Query: GSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVV-----DPSWYADSGASSHVTADYNAI
C C + GH C PN + +G+ +GQ + + N ++ F+ E + + W D+ AS H T +
Subjt: GSFNNKPVCQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVV-----DPSWYADSGASSHVTADYNAI
Query: ANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVK-TLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDT--GMVLLKGTLSDGLYRFD
V + V +G+ S I +G+ C+ V TL L+++ VP + NL+S L +D + + K + T +V+ KG LYR +
Subjt: ANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVK-TLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDT--GMVLLKGTLSDGLYRFD
Query: GVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKF
+ Q ++N + + IS ++WH+R+GH S K L+ L + + K C+ C FGK H + F S R +
Subjt: GVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKF
Query: ELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYT--HIHRLCETMGVQ
+LV++D+ GP +ES G +++V F+DD SR W+Y LK K+ F F ALV+ + +K L+SDNGGEYT C + G++
Subjt: ELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYT--HIHRLCETMGVQ
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| Q12141 Transposon Ty1-GR1 Gag-Pol polyprotein | 2.3e-12 | 28.83 | Show/hide |
Query: HRRLGHPSLKVLESLVRSCNLPTKTNE---------EFKFCEACQFGKS--------HALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLD
HR L H + + + +++ N T NE +++ C C GKS L + NS F+ +HTD++GP +++ F D
Subjt: HRRLGHPSLKVLESLVRSCNLPTKTNE---------EFKFCEACQFGKS--------HALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLD
Query: DYSRFSWIYPL--KRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTH--IHRLCETMGV
+ ++F W+YPL +R++ + FT A +KNQF S+ +Q D G EYT+ +H+ E G+
Subjt: DYSRFSWIYPL--KRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTH--IHRLCETMGV
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 7.2e-59 | 29.36 | Show/hide |
Query: GTDQAATSGGSTTI--------VVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMN
G + A GSTT+ +NP Y W D+L+ + +++ V V + +W +++++ S LR +Q KG+ ++
Subjt: GTDQAATSGGSTTI--------VVEEINPAYEAWVAVDQLLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMN
Query: DYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGR-FGITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQN
DY++ + + D L G P+ V +VL L EEY PV+ I + T +E+ LL E ++ L S T + I + N VS+++++ N N
Subjt: DYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNPVVAMIQGR-FGITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQN
Query: QSG-NNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPV---CQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSF
NNR +N R + + + +KP CQ+CG GH+ C Q + F +Q P T QP A +A
Subjt: QSG-NNRQNNFGRGFQRGGGRGRGRGRGYGYGSFNNKPV---CQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSF
Query: VASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDH
+ SP + +W DSGA+ H+T+D+N ++ Y G V V DGS++ I G++ L+ + L+L NIL VP+I KNL+SV +L N V VEF
Subjt: VASPETVVDPSWYADSGASSHVTADYNAIANPVEYEGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDH
Query: CCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPT-KTNEEF
VKD +TG+ LL+G D LY + V S + SK +S WH RLGHP+ +L S++ + +L + +F
Subjt: CCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDVSNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPT-KTNEEF
Query: KFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGE
C C KS+ +PF+ S E +++D+W +P+ S+ +R+YV+F+D ++R++W+YPLK+K+ F F L++N+F T I T SDNGGE
Subjt: KFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGE
Query: YTHIHRLCETMGV
+ + G+
Subjt: YTHIHRLCETMGV
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.0e-57 | 27.58 | Show/hide |
Query: IRATMTSVNSSGISALSSGNSFS-SPPLNQLLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQ
+ + +VN S ++ L+S N S ++ L + G L G+ P PP ++ GTD V +NP Y W D+
Subjt: IRATMTSVNSSGISALSSGNSFS-SPPLNQLLNPITSVKLDRGHLIGTKPCPPKILQASVDRSGPSSSTGTDQAATSGGSTTIVVEEINPAYEAWVAVDQ
Query: LLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNP
L+ + +++ V V + +W +++++ S LR + + D L G P+ V +VL L ++Y P
Subjt: LLLGWLYNSMTPEVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLGLDEEYNP
Query: VVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSV--NMVSNKDSSGQRNQNQSGNNR----QNNFGRGFQRGGGRGRGRGRGYGYGSFN
V+ I + + L +RL + S +L ++ + N+V++++++ RNQN G+NR NN +Q R R
Subjt: VVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLTISQGTSV--NMVSNKDSSGQRNQNQSGNNR----QNNFGRGFQRGGGRGRGRGRGYGYGSFN
Query: NKPV---CQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEY
KP CQ+C GH+ C Q +Q Q+ + +Q+ T QP A +A V SP +W DSGA+ H+T+D+N ++ Y
Subjt: NKPV---CQVCGKIGHTTLMCYQRFNKEFSGPNQAQNRGDPRQNGQLSTTVQPSAYVANQSLNSFVASPETVVDPSWYADSGASSHVTADYNAIANPVEY
Query: EGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDV
G V + DGS++ I G++ L ++L L +L VP+I KNL+SV +L NRV VEF VKD +TG+ LL+G D LY + +V +
Subjt: EGNACVTVGDGSSLNIKSVGNSCLTDGVKTLSLENILCVPSIAKNLVSVSKLAQDNRVFVEFHDHCCFVKDKDTGMVLLKGTLSDGLYRFDGVRVDSVDV
Query: SNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPT-KTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLW
S K + + WH RLGHPSL +L S++ + +LP + + C C KSH +PF+NS E +++D+W
Subjt: SNSAYQKVQSKVNNSIESACVLSNTVNLVISKNVWHRRLGHPSLKVLESLVRSCNLPT-KTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLW
Query: GPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGV
+P+ S +R+YV+F+D ++R++W+YPLK+K+ F F +LV+N+F T I TL SDNGGE+ + G+
Subjt: GPAPVESNQGFRFYVLFLDDYSRFSWIYPLKRKNVAMIAFTHFTALVKNQFNTSIKTLQSDNGGEYTHIHRLCETMGV
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 1.1e-04 | 27.1 | Show/hide |
Query: WVAVDQLLLGWLYNSMTP-EVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLG
W D ++ LY ++TP + + S+D+W I+ F A L + G M++ DY R MK D+L PV R+LV VL G
Subjt: WVAVDQLLLGWLYNSMTP-EVAVQVMGFENSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLG
Query: LDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLT-ISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGY--
L+ +++ ++ +I+ R S A ++ E+ L+ ++K + T + +S +++ ++ N +SG N+ GRG RG RGRG + Y
Subjt: LDEEYNPVVAMIQGRFGITWSEMQAELLVFEKRLELQTSLKTSLT-ISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGY--
Query: ----GSFNNKPVCQ
S+N P Q
Subjt: ----GSFNNKPVCQ
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| AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 9.5e-06 | 26.11 | Show/hide |
Query: WVAVDQLLLGWLYNSMTPEVAVQVMGFE-NSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLG
W D L+ W+Y ++T + ++ ++DLW +++ LF A + + +++Y + +KS +D L SP++ R LV +L G
Subjt: WVAVDQLLLGWLYNSMTPEVAVQVMGFE-NSQDLWAAIQELFGVQSRAEEDYLRQVFQQCRKGSMKMNDYLRVMKSHTDNLGQAGSPVATRSLVSQVLLG
Query: LDEEYNPVVAMIQGRFGI-TWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGS
L E+Y+ ++ +I+ + +++E ++ LL+ E RL ++ K+SL+ + S++ V Q Q +N +N GRG + RG G G Y +
Subjt: LDEEYNPVVAMIQGRFGI-TWSEMQAELLVFEKRLELQTSLKTSLTISQGTSVNMVSNKDSSGQRNQNQSGNNRQNNFGRGFQRGGGRGRGRGRGYGYGS
Query: FNN
NN
Subjt: FNN
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| ATMG00300.1 Gag-Pol-related retrotransposon family protein | 7.0e-09 | 36.62 | Show/hide |
Query: VWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPV
+WH RL H S + +E LV+ L + KFCE C +GK+H + F+ + + VH+DLWG V
Subjt: VWHRRLGHPSLKVLESLVRSCNLPTKTNEEFKFCEACQFGKSHALPFNNSVSRVCSKFELVHTDLWGPAPV
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