; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014454 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014454
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:985571..986341
RNA-Seq ExpressionLag0014454
SyntenyLag0014454
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN77641.1 hypothetical protein VITISV_007623 [Vitis vinifera]2.8e-2830.86Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLMN-QIEEWDSLV-SLIGRFNPSNREDLLIWSLDNLGLFLVKSALE
        G++  F ED W GDQP  T +P L+R+ +     I  +L      +W+L F  NL + +IE+ + L+ SL   +   +  D  +W L + GLF VKS   
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLMN-QIEEWDSLV-SLIGRFNPSNREDLLIWSLDNLGLFLVKSALE

Query:  SLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPKCME
        +L        D  S  +W    P KVK F+     K +NT + +Q R P   LSP  C++C K  ES  H  +HC     +W    ++       P+ + 
Subjt:  SLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPKCME

Query:  RWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQF
          +     G     +  VLW+    A+  ++W ERN+RIF NK+ + +F  D + F
Subjt:  RWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQF

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]1.6e-2830.5Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQIEEWDSLVSLIGRFNPS-NREDLLIWSLDNLGLFLVKS---
        GD+  F ED W GDQ     FP L R+ +     I  +L      +W+  F  NL  ++IEE +SL+  +   + S +  D   WSL + GLF VKS   
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQIEEWDSLVSLIGRFNPS-NREDLLIWSLDNLGLFLVKS---

Query:  ALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPK
        AL  +    L+    L   +W    P K+KFF+     K +NT++ +Q R P   LSP  C++C +  E+  H  +HC     +W    ++       P+
Subjt:  ALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPK

Query:  CMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQF
         +   ++   +G     +  VLW+    A+ W++W+ERN+RIF +KS + +   D++ F
Subjt:  CMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQF

RVW70235.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.8e-2829.73Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQIEEWDSLVSLIGRFN-PSNREDLLIWSLDNLGLFLVKSALE
        GD+  F +D W G+QP    +P L R+     + I  +L      +W+  F  NL  ++IE+ + L+    R +  S+  D   WSL + GLF VKS   
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQIEEWDSLVSLIGRFN-PSNREDLLIWSLDNLGLFLVKSALE

Query:  SLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPKCME
        +L    +      +  +W    P KVK F+     K +NT + +Q R P   LSP  C +C K  E+  H  +HC     +W    +        P+ + 
Subjt:  SLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPKCME

Query:  RWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTT
          LA   +G     +  VLW+N   A+ W++W+ERN+RIF +K+ + ++  D + F T+
Subjt:  RWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTT

XP_030479135.1 uncharacterized protein LOC115696374 [Cannabis sativa]2.5e-2928.84Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF
        GDK  F ED W GD   +  +P L  IS +   +I +L+ +         +WD +F  NL+   +E  SL+ ++ +       +   D+ IW  D  G+F
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF

Query:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG
          KSA     S + +     +  +WK  A  +VK F+       +N  + +Q+R P + +SPGWCV C  + E   H  +HC F++ +W    + FG   
Subjt:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG

Query:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS
          P+ + + L   + G     +  +LW+  V A  W +W ERN+RIF +  +S     D ++F T +
Subjt:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS

XP_030505044.1 uncharacterized protein LOC115720016 [Cannabis sativa]8.6e-3030.43Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF
        GDK  FCED W GD   +  +P L  IS +    I DL+ +         +WD +F  NL+ +  E  SL+ ++ +       +   D+ IW  D  G+F
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF

Query:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG
          KSA     S +       +  +WK +A  +VK F+       +N  + +Q+R P + +SPGWCV C  S E   H  +HC F++ +W    + FG   
Subjt:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG

Query:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSS
          P+ + + L   + G     +  +LW+  V A  W +W ERN+RIF +  +S
Subjt:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSS

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein7.8e-2930.5Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQIEEWDSLVSLIGRFNPS-NREDLLIWSLDNLGLFLVKS---
        GD+  F ED W GDQ     FP L R+ +     I  +L      +W+  F  NL  ++IEE +SL+  +   + S +  D   WSL + GLF VKS   
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD---TWDLRFHMNLM-NQIEEWDSLVSLIGRFNPS-NREDLLIWSLDNLGLFLVKS---

Query:  ALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPK
        AL  +    L+    L   +W    P K+KFF+     K +NT++ +Q R P   LSP  C++C +  E+  H  +HC     +W    ++       P+
Subjt:  ALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPK

Query:  CMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQF
         +   ++   +G     +  VLW+    A+ W++W+ERN+RIF +KS + +   D++ F
Subjt:  CMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQF

A0A803P465 Uncharacterized protein8.1e-3435.18Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLND--------DTWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF
        GD+  F ED W  D P ++ FP+L  IS    + IK+L+ D        ++W+ +F  NLM++  E  SL+SL+ +       S  ED  IW  D  G+F
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLND--------DTWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF

Query:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG
          KSA   + S       + +  +WK  AP KVK F     L+ +N  +++QKR P LY+SPGWCV C  S ES  H  + C F   +W +    FG   
Subjt:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG

Query:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSS
          P+ +   +A  L G   K K   LW++ + A  W +W ERN+RIF   + S
Subjt:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSS

A0A803PZR8 Uncharacterized protein4.1e-3030.43Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF
        GDK  FCED W GD   +  +P L  IS +    I DL+ +         +WD +F  NL+ +  E  SL+ ++ +       +   D+ IW  D  G+F
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF

Query:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG
          KSA     S +       +  +WK +A  +VK F+       +N  + +Q+R P + +SPGWCV C  S E   H  +HC F++ +W    + FG   
Subjt:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG

Query:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSS
          P+ + + L   + G     +  +LW+  V A  W +W ERN+RIF +  +S
Subjt:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSS

A0A803QEA6 Uncharacterized protein9.2e-3031.84Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF
        G++  F ED W G       FPNL  IS +    I++++ D+        +WDL F  N+M++  E  SL  L+ +       +  ED   W  D+ G+F
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF

Query:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG
          KSA     S     E   +  +WK   P KVK F     L  +N   R+QK+ P + +SPGWCV C  S E   H  + C  A+S+W      F  + 
Subjt:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG

Query:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS
          P  ++  L   + G     ++  LWR  V +V W++W ERN+RIF    SS +   D ++F T S
Subjt:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS

A0A803QGT5 Uncharacterized protein1.2e-2928.84Show/hide
Query:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF
        GDK  F ED W GD   +  +P L  IS +   +I +L+ +         +WD +F  NL+   +E  SL+ ++ +       +   D+ IW  D  G+F
Subjt:  GDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDD--------TWDLRFHMNLMNQIEEWDSLVSLIGRFNP----SNREDLLIWSLDNLGLF

Query:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG
          KSA     S + +     +  +WK  A  +VK F+       +N  + +Q+R P + +SPGWCV C  + E   H  +HC F++ +W    + FG   
Subjt:  LVKSALESLQSKRLILEDNLSYQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKG

Query:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS
          P+ + + L   + G     +  +LW+  V A  W +W ERN+RIF +  +S     D ++F T +
Subjt:  CRPKCMERWLAEILDGKFVKGKARVLWRNVVRAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGATAAGGCTTTCTTTTGTGAGGACAGATGGAGGGGCGATCAACCTTTTATAACTGTCTTTCCTAATTTGTATAGAATCTCTCTATCCAATGGCTCCTTCATAAA
AGACCTTTTGAATGACGACACTTGGGATCTTCGGTTCCACATGAACTTGATGAATCAGATAGAAGAGTGGGACAGCTTGGTCTCTTTGATAGGCAGGTTTAACCCTTCTA
ATCGGGAAGATCTCCTTATCTGGAGCTTGGACAATTTAGGTTTGTTTTTGGTCAAGTCAGCCTTAGAGTCTTTGCAATCTAAGCGTCTTATTCTTGAAGATAACCTCAGC
TACCAAATTTGGAAAGGCTCAGCCCCTATGAAAGTTAAATTTTTCCTGAGGTCAGCGACCCTTAAGAGCATAAACACCACAAACAGAATTCAAAAGAGATTCCCTAATTT
GTACCTCTCCCCTGGTTGGTGCGTGATGTGTGGCAAGAGTGAGGAGTCTCAACCTCATGCTTTGATTCACTGTGACTTTGCAACCTCTGTTTGGGGTCATTTCAGCAAGA
TTTTTGGGTGGAAAGGTTGTAGACCAAAATGTATGGAAAGATGGTTGGCTGAAATTCTTGATGGTAAGTTTGTGAAAGGCAAAGCTAGGGTGTTGTGGAGGAATGTGGTG
CGAGCTGTCCCTTGGCTTCTTTGGAAGGAGAGGAATTCAAGAATTTTTGCAAATAAGAGCTCTTCTTTTGATTTCTTTTGTGATCTTGTACAGTTTACGACAACCTCTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGGGCGATAAGGCTTTCTTTTGTGAGGACAGATGGAGGGGCGATCAACCTTTTATAACTGTCTTTCCTAATTTGTATAGAATCTCTCTATCCAATGGCTCCTTCATAAA
AGACCTTTTGAATGACGACACTTGGGATCTTCGGTTCCACATGAACTTGATGAATCAGATAGAAGAGTGGGACAGCTTGGTCTCTTTGATAGGCAGGTTTAACCCTTCTA
ATCGGGAAGATCTCCTTATCTGGAGCTTGGACAATTTAGGTTTGTTTTTGGTCAAGTCAGCCTTAGAGTCTTTGCAATCTAAGCGTCTTATTCTTGAAGATAACCTCAGC
TACCAAATTTGGAAAGGCTCAGCCCCTATGAAAGTTAAATTTTTCCTGAGGTCAGCGACCCTTAAGAGCATAAACACCACAAACAGAATTCAAAAGAGATTCCCTAATTT
GTACCTCTCCCCTGGTTGGTGCGTGATGTGTGGCAAGAGTGAGGAGTCTCAACCTCATGCTTTGATTCACTGTGACTTTGCAACCTCTGTTTGGGGTCATTTCAGCAAGA
TTTTTGGGTGGAAAGGTTGTAGACCAAAATGTATGGAAAGATGGTTGGCTGAAATTCTTGATGGTAAGTTTGTGAAAGGCAAAGCTAGGGTGTTGTGGAGGAATGTGGTG
CGAGCTGTCCCTTGGCTTCTTTGGAAGGAGAGGAATTCAAGAATTTTTGCAAATAAGAGCTCTTCTTTTGATTTCTTTTGTGATCTTGTACAGTTTACGACAACCTCTTA
G
Protein sequenceShow/hide protein sequence
MGDKAFFCEDRWRGDQPFITVFPNLYRISLSNGSFIKDLLNDDTWDLRFHMNLMNQIEEWDSLVSLIGRFNPSNREDLLIWSLDNLGLFLVKSALESLQSKRLILEDNLS
YQIWKGSAPMKVKFFLRSATLKSINTTNRIQKRFPNLYLSPGWCVMCGKSEESQPHALIHCDFATSVWGHFSKIFGWKGCRPKCMERWLAEILDGKFVKGKARVLWRNVV
RAVPWLLWKERNSRIFANKSSSFDFFCDLVQFTTTS