; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014503 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014503
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:1451509..1453187
RNA-Seq ExpressionLag0014503
SyntenyLag0014503
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68820.1 hypothetical protein VITISV_009132 [Vitis vinifera]3.6e-6032.93Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-----MPSFKQK-------------VSVLYGENC------------------
        AFVEGR ILD +LIANE++D+ +   K GIV K+D EKA   +   FL        F QK              ++L   N                   
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-----MPSFKQK-------------VSVLYGENC------------------

Query:  ---------LSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCR
                 LSRLL      G     ++G    +++ LQFADDT++FS +  + + NL  I+ +F Q SGL IN  KS + GIN   E ++ LT  F CR
Subjt:  ---------LSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCR

Query:  LGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKG-----------------------------------------GANGDGGMHNVKWD
        +  WP  YLGLPLGGNP    FW PV+E+I  RL  WK +++S G                                         GA      H VKW+
Subjt:  LGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKG-----------------------------------------GANGDGGMHNVKWD

Query:  ITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWI
        +  RP ++GGL  G I  RN+ALL KW+WRF  E   LW KVI                   S +  W +I+ +       +   +GNG    FW D+W 
Subjt:  ITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWI

Query:  QNHTLASLYPRLYRFSTSTHASVANV-WKADNGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFT
         N +L S +  LYR  +  + +V+NV   +    W+++FRRNL DSEI     L   LSSV    +  D   W+  SS   SV S    L+     ++F 
Subjt:  QNHTLASLYPRLYRFSTSTHASVANV-WKADNGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFT

Query:  P
        P
Subjt:  P

CAN75609.1 hypothetical protein VITISV_002943 [Vitis vinifera]2.1e-6032.53Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-----MPSFKQK-------------VSVLYGENC------------------
        AFVEGRQILDA LIANE++D+ +   + G+V K+D EKA   +   FL        F QK              ++L   N                   
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-----MPSFKQK-------------VSVLYGENC------------------

Query:  ---------LSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCR
                 LSRL+      G      +G    +++ LQFADDT+ FS +    + NL  I+ +F Q SGL IN  KS + GIN   E ++ L     CR
Subjt:  ---------LSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCR

Query:  LGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWD
        +  WP  YLGLPLGGNP    FW PV+E+I  RL  WK +++S GG                                          G+G   H ++W+
Subjt:  LGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWD

Query:  ITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVIKA-------------TNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWI
        +  RP +MGGL  G    RN ALL KW+WRF  E   LW KVI +                 S +  W +I+ +       ++  +GNG    FW D+W 
Subjt:  ITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVIKA-------------TNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWI

Query:  QNHTLASLYPRLYRFSTSTHASVANVWKADNGV-WDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFT
         N TL + +  LYR S+  + +V+NV      + W+ +FRRNL DSEI  +  L   L SV+L  + +D  +W+  SS +FSV S    L+     ++F 
Subjt:  QNHTLASLYPRLYRFSTSTHASVANVWKADNGV-WDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFT

Query:  P
        P
Subjt:  P

KAA0045138.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.6e-6132.54Show/hide
Query:  MAFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-MPSFKQKVS-------------VLYGENCLSRLLHHGAHLGKIVSNTIGT
        +AFV+ RQI DA L+ANE +D W+ KK  G +LKLD+EKA   L  DF+ +P  + K +              +   + LSRLL H    G I   ++ +
Subjt:  MAFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-MPSFKQKVS-------------VLYGENCLSRLLHHGAHLGKIVSNTIGT

Query:  SCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKI
        +C  I+H+ FADD LLF   +D  + NL   + +FE+ASGL IN  KS L+ +N+           +G      P  YLG+PLGGNP  + FW+ V +KI
Subjt:  SCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKI

Query:  QHRLQNWKYSFISKGGA-----------------------------------------NGDGGMHNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWR
        Q +L NWKY+ ISK G                                          NG  G H + W    +  + G L I  +   N ALL+KW+WR
Subjt:  QHRLQNWKYSFISKGGA-----------------------------------------NGDGGMHNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWR

Query:  FVYEDEALWCKVIKATNEG-------------SSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKAD
        ++ E  ALW ++I+   +G             + KA W SI    +  K N   EL NG+  SFW+  W     L++ YPRL+  +     SV + W   
Subjt:  FVYEDEALWCKVIKATNEG-------------SSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKAD

Query:  NGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLKNHNDWWSWNYGSSKTFSVHSMMEVLTLQ
        +  W++ FRR LND E ++W  +   L +      +   +WN  S+ +FS+ S   +++ Q
Subjt:  NGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLKNHNDWWSWNYGSSKTFSVHSMMEVLTLQ

RVW12714.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.1e-6032.54Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI------------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNT
        AFV+GRQILDA LIANEI+D+ +   + G+V K+D EKA   +I                  GD L P     V+     + LSR+L        +    
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI------------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNT

Query:  IGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVL
        +G +  +++HLQFADDT+ FSS+ ++ +  L  ++ +F   SGL +N  KS + GIN+    ++RL     C+   WP +YLGLPLGGNP  S FW PV+
Subjt:  IGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVL

Query:  EKIQHRLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKW
        E+I  RL  W+ +++S GG                                          G+G   H V WD+  +P   GGL  G I  RNVALL KW
Subjt:  EKIQHRLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKW

Query:  IWRFVYEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVW
        +WR+  E  ALW +VI                   S +  W +I+++     +  +  +G+G+   FW D+W  + TL + YPRL    T  +A ++++ 
Subjt:  IWRFVYEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVW

Query:  KADNGV-WDMDFRRNLNDSEIAEWTSLSHCLSSV-VLKNHNDWWSWNYGSSKTFSVHSMMEVLT
               W+ +FRRNL DSEI +  SL   L  + +  +  D  SW+   S  F+V S    L+
Subjt:  KADNGV-WDMDFRRNLNDSEIAEWTSLSHCLSSV-VLKNHNDWWSWNYGSSKTFSVHSMMEVLT

RVW71380.1 putative ribonuclease H protein [Vitis vinifera]3.0e-6233.55Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI-------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNTIGTSC
        AFV+GRQI+DA LIANEI+D+ +   + G+V K+D EKA   +              GD L P     V+     + LSR+L        +    +G + 
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI-------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNTIGTSC

Query:  LKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQH
         +++HLQFADDT+ FS++ ++ +  L  ++  F   SGL +N  KS + GIN+    M+RL +T GC+   WP +YLGLPLGGNP    FW PV+E+I  
Subjt:  LKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQH

Query:  RLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWRFV
        RL  W+ +++S GG                                          G+G   H V+WD+   P + GGL  GNI  RN+ALL KW+WR+ 
Subjt:  RLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWRFV

Query:  YEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKADNG
         E  ALW +VI                   S +  W +IS +        +  +GNG    FW D+W  +  L S YP L+R     +  +++V      
Subjt:  YEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKADNG

Query:  V-WDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLT
          W+++FRRNL+DSEI +   L   L  V L  +  D  SW   SS  FSV S    L+
Subjt:  V-WDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLT

TrEMBL top hitse value%identityAlignment
A0A438BP29 Transposon TX1 uncharacterized 149 kDa protein1.0e-6032.54Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI------------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNT
        AFV+GRQILDA LIANEI+D+ +   + G+V K+D EKA   +I                  GD L P     V+     + LSR+L        +    
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI------------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNT

Query:  IGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVL
        +G +  +++HLQFADDT+ FSS+ ++ +  L  ++ +F   SGL +N  KS + GIN+    ++RL     C+   WP +YLGLPLGGNP  S FW PV+
Subjt:  IGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVL

Query:  EKIQHRLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKW
        E+I  RL  W+ +++S GG                                          G+G   H V WD+  +P   GGL  G I  RNVALL KW
Subjt:  EKIQHRLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKW

Query:  IWRFVYEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVW
        +WR+  E  ALW +VI                   S +  W +I+++     +  +  +G+G+   FW D+W  + TL + YPRL    T  +A ++++ 
Subjt:  IWRFVYEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVW

Query:  KADNGV-WDMDFRRNLNDSEIAEWTSLSHCLSSV-VLKNHNDWWSWNYGSSKTFSVHSMMEVLT
               W+ +FRRNL DSEI +  SL   L  + +  +  D  SW+   S  F+V S    L+
Subjt:  KADNGV-WDMDFRRNLNDSEIAEWTSLSHCLSSV-VLKNHNDWWSWNYGSSKTFSVHSMMEVLT

A0A438GGQ4 Putative ribonuclease H protein1.4e-6233.55Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI-------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNTIGTSC
        AFV+GRQI+DA LIANEI+D+ +   + G+V K+D EKA   +              GD L P     V+     + LSR+L        +    +G + 
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLI-------------GDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNTIGTSC

Query:  LKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQH
         +++HLQFADDT+ FS++ ++ +  L  ++  F   SGL +N  KS + GIN+    M+RL +T GC+   WP +YLGLPLGGNP    FW PV+E+I  
Subjt:  LKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQH

Query:  RLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWRFV
        RL  W+ +++S GG                                          G+G   H V+WD+   P + GGL  GNI  RN+ALL KW+WR+ 
Subjt:  RLQNWKYSFISKGG----------------------------------------ANGDGGM-HNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWRFV

Query:  YEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKADNG
         E  ALW +VI                   S +  W +IS +        +  +GNG    FW D+W  +  L S YP L+R     +  +++V      
Subjt:  YEDEALWCKVI-------------KATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKADNG

Query:  V-WDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLT
          W+++FRRNL+DSEI +   L   L  V L  +  D  SW   SS  FSV S    L+
Subjt:  V-WDMDFRRNLNDSEIAEWTSLSHCLSSVVLK-NHNDWWSWNYGSSKTFSVHSMMEVLT

A0A5A7TQI1 LINE-1 retrotransposable element ORF2 protein2.7e-6132.54Show/hide
Query:  MAFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-MPSFKQKVS-------------VLYGENCLSRLLHHGAHLGKIVSNTIGT
        +AFV+ RQI DA L+ANE +D W+ KK  G +LKLD+EKA   L  DF+ +P  + K +              +   + LSRLL H    G I   ++ +
Subjt:  MAFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL-MPSFKQKVS-------------VLYGENCLSRLLHHGAHLGKIVSNTIGT

Query:  SCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKI
        +C  I+H+ FADD LLF   +D  + NL   + +FE+ASGL IN  KS L+ +N+           +G      P  YLG+PLGGNP  + FW+ V +KI
Subjt:  SCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKI

Query:  QHRLQNWKYSFISKGGA-----------------------------------------NGDGGMHNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWR
        Q +L NWKY+ ISK G                                          NG  G H + W    +  + G L I  +   N ALL+KW+WR
Subjt:  QHRLQNWKYSFISKGGA-----------------------------------------NGDGGMHNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWR

Query:  FVYEDEALWCKVIKATNEG-------------SSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKAD
        ++ E  ALW ++I+   +G             + KA W SI    +  K N   EL NG+  SFW+  W     L++ YPRL+  +     SV + W   
Subjt:  FVYEDEALWCKVIKATNEG-------------SSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKAD

Query:  NGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLKNHNDWWSWNYGSSKTFSVHSMMEVLTLQ
        +  W++ FRR LND E ++W  +   L +      +   +WN  S+ +FS+ S   +++ Q
Subjt:  NGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLKNHNDWWSWNYGSSKTFSVHSMMEVLTLQ

M5WPQ5 Reverse transcriptase domain-containing protein3.2e-6233.19Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFLMPSFKQK----------VSVLYGENCLSRL---------LHHGAHLGKIVSN
        AFV+ RQILDA L+ANE++++ + +K+ G+V K+D EKA   +  +F+     +K          +  L   N    +            G   G  +S 
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFLMPSFKQK----------VSVLYGENCLSRL---------LHHGAHLGKIVSN

Query:  TIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPV
         + T  ++++HLQFADDT+      ++   NL  ++ +F   SG+ IN  KS +LGIN  TE +N +  ++GC +GCWP +YLGLPLGGNP    FW PV
Subjt:  TIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPV

Query:  LEKIQHRLQNWKYSFISKGG---------------------------ANGDGGMHN--------------VKWDITQRPLQMGGLAIGNIKHRNVALLSK
        +EK++ RLQ WK + +SKGG                           A  +  M N              V+W+   +  + GGL IG+++ RN AL +K
Subjt:  LEKIQHRLQNWKYSFISKGG---------------------------ANGDGGMHN--------------VKWDITQRPLQMGGLAIGNIKHRNVALLSK

Query:  WIWRFVYEDEALWCKVIKA-----TNEGSSKAL--------WSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANV
        W+WRF  E  +LW ++IK+     +N   +K +        W  IS   N   Q  +  +GNG    FW D+W++   L  L+PRL   S   + S+A  
Subjt:  WIWRFVYEDEALWCKVIKA-----TNEGSSKAL--------WSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANV

Query:  WKADNGV----WDMDFRRNLNDSEIAEWTSLSHCLSSVVL-KNHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFTPW
          A+N V    WD DFRRNL+++E+AE   L   L +V L  +  D  SW      +FS  S    L L     VF P+
Subjt:  WKADNGV----WDMDFRRNLNDSEIAEWTSLSHCLSSVVL-KNHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFTPW

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)7.9e-6131.88Show/hide
Query:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL----------------------------------MPSFKQKVSVLYGE----
        AFV+ RQILDA L+ANE++++ + +K+ G+V K+D EKA   +  +F+                                     F+    +  G+    
Subjt:  AFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFL----------------------------------MPSFKQKVSVLYGE----

Query:  -------NCLSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCR
               + LSRL+     +  +     G   ++++HLQFADDT+      ++   NL  ++ +F   SG+ IN  KS +LGIN  TE +N +  ++GC 
Subjt:  -------NCLSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKSIANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCR

Query:  LGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGG---------------------------ANGDGGMHN--------------VKWD
        +GCWP VYLGLPLGGNP    FW PV+EK++ RLQ WK + +SKGG                           A  +  M N              V+W+
Subjt:  LGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGG---------------------------ANGDGGMHN--------------VKWD

Query:  ITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVIKA-----TNEGSSKAL--------WSSISMLNNIVKQNIKRELGNGNYNSFWHDVWI
           +  + GGL IG+++ RN AL +KW+WRF  E  +LW ++IK+     +N   +K +        W  IS   N   Q  +  +GNG    FW D+W+
Subjt:  ITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVIKA-----TNEGSSKAL--------WSSISMLNNIVKQNIKRELGNGNYNSFWHDVWI

Query:  QNHTLASLYPRLYRFSTSTHASVANVWKADNGV----WDMDFRRNLNDSEIAEWTSLSHCLSSVVL-KNHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIV
        +   L  L+PRL   S   + S+A    A+N V    WD DFRRNL+++EIAE   L   L +V L  +  D  SW      +FS  S    L L     
Subjt:  QNHTLASLYPRLYRFSTSTHASVANVWKADNGV----WDMDFRRNLNDSEIAEWTSLSHCLSSVVL-KNHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIV

Query:  VFTPW
        VF P+
Subjt:  VFTPW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.0e-1026.72Show/hide
Query:  TQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGGANGDGGMHNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYE
        T +F  RL    +V   +P+    S S    P  + I +RL     +F+  G        H VKW     P + GGL +   K  N AL+SK  WR + E
Subjt:  TQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGGANGDGGMHNVKWDITQRPLQMGGLAIGNIKHRNVALLSKWIWRFVYE

Query:  DEALWCKVIK-------------ATNEGSSKALWSSISM-LNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKADNGV
          +LW  V++                +GS  + W SI++ L ++V   +    G+G    FW D W+    L  L     R +        ++W    G 
Subjt:  DEALWCKVIK-------------ATNEGSSKALWSSISM-LNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWKADNGV

Query:  WDMDFRRNLNDSEIAEWTSLSHCLS--SVVL---KNHNDWWSWNYGSSKTFSVHSMMEVLTL
        WD         ++I  +T+ +  L   +VVL       D  SW +     FSV S  E+LT+
Subjt:  WDMDFRRNLNDSEIAEWTSLSHCLS--SVVL---KNHNDWWSWNYGSSKTFSVHSMMEVLTL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTTGTAGAAGGAAGACAGATTTTAGATGCCTCACTTATTGCCAACGAGATTATAGATGATTGGCAGACAAAAAAGAAATCAGGTATAGTTCTTAAATTGGACTT
AGAGAAGGCTTTGATAAGGTTGATTGGGGATTTCTTGATGCCATCCTTCAAGCAAAAGGTTTCGGTTCTCTATGGCGAAAATTGTCTTAGCCGTCTTTTACATCATGGGG
CACATCTTGGCAAGATTGTGAGCAATACTATTGGTACTTCTTGTCTCAAGATTAATCACTTACAATTTGCAGATGATACATTATTGTTCTCCTCTAGTGATGACAAATCA
ATTGCAAATCTCTTTGATATAATTCATATATTTGAGCAGGCTTCCGGTCTTAATATAAATTATGGAAAGAGTGAATTACTTGGCATCAACATTCCTACTGAAGACATGAA
TCGCTTGACTCAAACTTTTGGTTGTAGATTGGGTTGTTGGCCTTCTGTTTATCTTGGTCTTCCTTTAGGTGGCAATCCTTCACGATCTTGCTTTTGGCAACCAGTTTTGG
AGAAAATTCAGCATAGGTTACAAAACTGGAAATACTCTTTTATTTCCAAGGGAGGAGCTAATGGTGATGGAGGAATGCACAATGTGAAATGGGATATAACACAACGCCCC
CTTCAAATGGGTGGTCTGGCCATTGGTAACATCAAGCATAGGAATGTGGCTCTCTTATCAAAATGGATATGGAGATTTGTTTATGAAGATGAAGCTCTCTGGTGTAAAGT
CATCAAAGCTACGAATGAAGGATCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAACATTGTAAAACAGAATATTAAAAGAGAATTGGGCAATGGAAATTACA
ACTCTTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGGCTTCCTTATATCCAAGACTGTACAGATTTTCCACAAGTACTCATGCTTCAGTGGCCAATGTATGGAAA
GCTGACAATGGAGTTTGGGACATGGATTTCAGGAGAAATCTAAATGATTCTGAAATAGCTGAATGGACCTCCTTGTCTCATTGCCTTTCATCTGTTGTTTTAAAAAATCA
CAATGACTGGTGGAGTTGGAATTATGGATCATCTAAAACCTTTTCAGTCCATTCGATGATGGAGGTTTTAACACTTCAGGGAGCCATAGTGGTGTTCACACCATGGATCA
CCTTCAACGACGACAACCTTATCTCTCCATTTCACCTTCATGCTGTATTATGTGTTTTGCAAGTTCAGAATCTCCATGTCATCTATTCGGTTATTGTTCCTTTGCTCAAC
AATATTGGAATTTCATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTTGTAGAAGGAAGACAGATTTTAGATGCCTCACTTATTGCCAACGAGATTATAGATGATTGGCAGACAAAAAAGAAATCAGGTATAGTTCTTAAATTGGACTT
AGAGAAGGCTTTGATAAGGTTGATTGGGGATTTCTTGATGCCATCCTTCAAGCAAAAGGTTTCGGTTCTCTATGGCGAAAATTGTCTTAGCCGTCTTTTACATCATGGGG
CACATCTTGGCAAGATTGTGAGCAATACTATTGGTACTTCTTGTCTCAAGATTAATCACTTACAATTTGCAGATGATACATTATTGTTCTCCTCTAGTGATGACAAATCA
ATTGCAAATCTCTTTGATATAATTCATATATTTGAGCAGGCTTCCGGTCTTAATATAAATTATGGAAAGAGTGAATTACTTGGCATCAACATTCCTACTGAAGACATGAA
TCGCTTGACTCAAACTTTTGGTTGTAGATTGGGTTGTTGGCCTTCTGTTTATCTTGGTCTTCCTTTAGGTGGCAATCCTTCACGATCTTGCTTTTGGCAACCAGTTTTGG
AGAAAATTCAGCATAGGTTACAAAACTGGAAATACTCTTTTATTTCCAAGGGAGGAGCTAATGGTGATGGAGGAATGCACAATGTGAAATGGGATATAACACAACGCCCC
CTTCAAATGGGTGGTCTGGCCATTGGTAACATCAAGCATAGGAATGTGGCTCTCTTATCAAAATGGATATGGAGATTTGTTTATGAAGATGAAGCTCTCTGGTGTAAAGT
CATCAAAGCTACGAATGAAGGATCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAACATTGTAAAACAGAATATTAAAAGAGAATTGGGCAATGGAAATTACA
ACTCTTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGGCTTCCTTATATCCAAGACTGTACAGATTTTCCACAAGTACTCATGCTTCAGTGGCCAATGTATGGAAA
GCTGACAATGGAGTTTGGGACATGGATTTCAGGAGAAATCTAAATGATTCTGAAATAGCTGAATGGACCTCCTTGTCTCATTGCCTTTCATCTGTTGTTTTAAAAAATCA
CAATGACTGGTGGAGTTGGAATTATGGATCATCTAAAACCTTTTCAGTCCATTCGATGATGGAGGTTTTAACACTTCAGGGAGCCATAGTGGTGTTCACACCATGGATCA
CCTTCAACGACGACAACCTTATCTCTCCATTTCACCTTCATGCTGTATTATGTGTTTTGCAAGTTCAGAATCTCCATGTCATCTATTCGGTTATTGTTCCTTTGCTCAAC
AATATTGGAATTTCATTCTGA
Protein sequenceShow/hide protein sequence
MAFVEGRQILDASLIANEIIDDWQTKKKSGIVLKLDLEKALIRLIGDFLMPSFKQKVSVLYGENCLSRLLHHGAHLGKIVSNTIGTSCLKINHLQFADDTLLFSSSDDKS
IANLFDIIHIFEQASGLNINYGKSELLGINIPTEDMNRLTQTFGCRLGCWPSVYLGLPLGGNPSRSCFWQPVLEKIQHRLQNWKYSFISKGGANGDGGMHNVKWDITQRP
LQMGGLAIGNIKHRNVALLSKWIWRFVYEDEALWCKVIKATNEGSSKALWSSISMLNNIVKQNIKRELGNGNYNSFWHDVWIQNHTLASLYPRLYRFSTSTHASVANVWK
ADNGVWDMDFRRNLNDSEIAEWTSLSHCLSSVVLKNHNDWWSWNYGSSKTFSVHSMMEVLTLQGAIVVFTPWITFNDDNLISPFHLHAVLCVLQVQNLHVIYSVIVPLLN
NIGISF