; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014521 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014521
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Genome locationchr12:1683845..1685021
RNA-Seq ExpressionLag0014521
SyntenyLag0014521
Gene Ontology termsGO:0009787 - regulation of abscisic acid-activated signaling pathway (biological process)
GO:0010100 - negative regulation of photomorphogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039324 - Protein SHORT HYPOCOTYL IN WHITE LIGHT 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588721.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
KAG7022508.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1996.15Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF++LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
XP_022927841.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]4.0e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
XP_022988955.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]4.0e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
XP_023530484.1 LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo]4.0e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
TrEMBL top hitse value%identityAlignment
A0A6J1D3L5 protein SHORT HYPOCOTYL IN WHITE LIGHT 17.4e-2096.15Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLD++QHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
A0A6J1EIN7 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like1.9e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
A0A6J1GJK6 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like2.4e-1894.23Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVW GILYLQDIRSHR DQLDDDQ HAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
A0A6J1I8W5 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like9.6e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQ HAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
A0A6J1JL13 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like1.9e-2098.08Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+LDDDQHHAWTGAQPAS
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33780.1 FUNCTIONS IN: molecular_function unknown1.4e-1055.77Show/hide
Query:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS
        V CTLGT VF SIL+IRG+W G+ Y+Q+ R++R ++L DD   AW G QP S
Subjt:  VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGAATAAGATGGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATAAAAGTGCTGGTCTGTTCATGTGGATTGATTATTCCTGCTGGTGGTCCGTGGTTGT
AGACCGTATGCGTAATATTCCTGCTATTGTGATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAG
ATATCCGCAGCCACAGATTTGATCAACTCGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGAATAAGATGGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATAAAAGTGCTGGTCTGTTCATGTGGATTGATTATTCCTGCTGGTGGTCCGTGGTTGT
AGACCGTATGCGTAATATTCCTGCTATTGTGATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAG
ATATCCGCAGCCACAGATTTGATCAACTCGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA
Protein sequenceShow/hide protein sequence
MTRIRWYLTLFVVYSEVDKSAGLFMWIDYSCWWSVVVDRMRNIPAIVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQHHAWTGAQPAS