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Lag0014571 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014571
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr12:2171845..2172462
RNA-Seq ExpressionLag0014571
SyntenyLag0014571
Gene Ontology termsGO:0003779 - actin binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type
IPR027310 - Profilin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]4.0e-5266.87Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MSS +IYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCG               FFHWADE EPS+D H +EL+LIRN CIRL ERLDEI E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVV
        EH+ E+ EW REK ELTLKL TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD    D+DD+T+ +
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVV

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]6.6e-5568.64Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MSS +IYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCG               FFHWADE EPS+D H +EL+LIRN CIRL ERLDEI E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EH+ E+ EW REK ELTLKL TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD    D+DD+TLV+YTL
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

XP_008236393.1 PREDICTED: uncharacterized protein At4g04775-like isoform X1 [Prunus mume]1.8e-3956.79Show/hide
Query:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERA
        E+S L+C CG+PAKLR S T KNPFRLFYNCPK IS QC                FF W+DEP P+ D   DE NLIR+ECIRLQE L+EI +E D ER 
Subjt:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERA

Query:  EWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EW REK ELT +L TLQ+ELD ++ RI++ANE   MPP D LSI D    D+DDD LV++T+
Subjt:  EWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]7.8e-5669.23Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MSS +IYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCG               FFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EH+ E+ EW REK ELTLKL TLQT+LDDI NRIR+ NE  SMPPF+SLSIR   D+D+++DTLVVY L
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]2.7e-5668.05Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MS+ +I+EES LECYCG+PAKLRTS T KNPFRLFYNCPKEISQQCG               FFHWADEPEPSDD H +ELNLIRN C+ LQ+RLDEI+E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EHD E+AEW R+K+ELTL+L TLQ++LDDI++RIR+ANE  SMPP D+LSIRD    DE DD LV+YTL
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein3.2e-5568.64Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MSS +IYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCG               FFHWADE EPS+D H +EL+LIRN CIRL ERLDEI E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EH+ E+ EW REK ELTLKL TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD    D+DD+TLV+YTL
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

A0A1S4E0B8 uncharacterized protein LOC1034952843.8e-5669.23Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MSS +IYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCG               FFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EH+ E+ EW REK ELTLKL TLQT+LDDI NRIR+ NE  SMPPF+SLSIR   D+D+++DTLVVY L
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

A0A5A7SJM5 GRF-type domain-containing protein3.8e-5669.23Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MSS +IYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCG               FFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EH+ E+ EW REK ELTLKL TLQT+LDDI NRIR+ NE  SMPPF+SLSIR   D+D+++DTLVVY L
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

A0A6J1D427 uncharacterized protein LOC1110173991.3e-5668.05Show/hide
Query:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE
        MS+ +I+EES LECYCG+PAKLRTS T KNPFRLFYNCPKEISQQCG               FFHWADEPEPSDD H +ELNLIRN C+ LQ+RLDEI+E
Subjt:  MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDE

Query:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EHD E+AEW R+K+ELTL+L TLQ++LDDI++RIR+ANE  SMPP D+LSIRD    DE DD LV+YTL
Subjt:  EHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

A0A6J5Y667 GRF-type domain-containing protein1.4e-3956.79Show/hide
Query:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERA
        E+S L+C CG+PAKLR S T KNPFRLFYNCPK IS QC                FF W+DEP P+ D   DE NLIR+ECIRLQE L+EI +E D ER 
Subjt:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERA

Query:  EWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
        EW REK ELT +L TLQ+ELD ++ RI++ANE   MPP D LSI D    D+DDD LV++T+
Subjt:  EWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein8.8e-0538.36Show/hide
Query:  LECYCGV-PAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWAD------EPEPSDDGH
        + C C   P    TS T+KNP R FY CP      CG+F W D  +   D  FF W D      E E   DG+
Subjt:  LECYCGV-PAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWAD------EPEPSDDGH

AT3G42860.1 zinc knuckle (CCHC-type) family protein1.1e-0448.94Show/hide
Query:  CYCGVP-AKLRTSLTQKNPFRLFYNCP-KEISQQCGFFHWADEPEPS
        C CGV    + TS T KNP R FY CP +E +  CGFF W D  + S
Subjt:  CYCGVP-AKLRTSLTQKNPFRLFYNCP-KEISQQCGFFHWADEPEPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTTGGGACATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAA
CTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTTCACTGGGCTGATGAACCTGAACCATCGGATGATGGACGTTTTTTTCACTGGGCTGATGAACCTGAACCATCCG
ATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCATTCGTCTACAAGAAAGATTAGACGAAATCGACGAGGAGCATGATATTGAAAGAGCAGAGTGGTTT
AGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACTGAGCTCGATGATATTCGGAATAGAATAAGGGTGGCAAATGAACCCTTGTCAATGCCTCCTTTTGA
TTCACTTTCCATTAGGGACAACGAGGATGAGGACGAGGACGATGACACACTAGTTGTATATACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTTGGGACATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAA
CTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTTCACTGGGCTGATGAACCTGAACCATCGGATGATGGACGTTTTTTTCACTGGGCTGATGAACCTGAACCATCCG
ATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCATTCGTCTACAAGAAAGATTAGACGAAATCGACGAGGAGCATGATATTGAAAGAGCAGAGTGGTTT
AGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACTGAGCTCGATGATATTCGGAATAGAATAAGGGTGGCAAATGAACCCTTGTCAATGCCTCCTTTTGA
TTCACTTTCCATTAGGGACAACGAGGATGAGGACGAGGACGATGACACACTAGTTGTATATACTTTGTAA
Protein sequenceShow/hide protein sequence
MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWF
REKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL