CuGenDBv2

Gene ID	Lag0014756
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	F-box protein SNE-like
Genome location	chr12:4404314..4404772
RNA-Seq Expression	Lag0014756
Synteny	Lag0014756
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-66

86.45

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Query:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAP     R++N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCK
        LSRLNRS  V RV TLQDQVQ LSLSLFCVDYYERNG LGGD  AAAPSLRFLCK
Subjt:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCK

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-67

86.16

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Query:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAP     R++N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        LSRLNRS  V RV TLQDQVQ LSLSLFCVDYYERNG LGGD  AAAPSLRFLCK VNV
Subjt:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

1.8e-59

76.1

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Query:  MQRNAPREDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL
        MQRNA  ++N     K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS++R VVLALGGYKRLYMLCLRP+L
Subjt:  MQRNAPREDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL

Query:  SRLN--RSDSVRRVWTLQDQVQLSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        +  N  RS  VRRV TLQD +QLSLSLF VD YER+G + GD  AAAPSLRFLCK VNV
Subjt:  SRLN--RSDSVRRVWTLQDQVQLSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

9.5e-69

86.79

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Query:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAP     R++N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        LSRLNRS  V RV TLQDQVQ LSLSLFCVDYYERNG LGGD  AAAPSLRFLCK VNV
Subjt:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

6.1e-68

86.16

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Query:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAP     R++N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        LSRLNRS  V RV TLQDQVQ LSLSLFCVDYYERNG LGGD  AAAPSLRFLCK VNV
Subjt:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A314UJT4 F-box protein SNE

5.3e-57

74.84

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Query:  QRNAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR
        Q+    ED  K+ KF INDH+DIL EILKRLDGPSL  AACVCRLW  LARN DSLWEHLCFRHVSSPPPSSVRPVV+ALGGYKRLY +C+RPVLSRL+ 
Subjt:  QRNAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR

Query:  SDSVRRVWTLQDQVQLSLSLFCVDYYERNGCL-----GGDAAAPSLRFLCKTVNV
        SD VRRVWT +D+VQLSLSLFCVDYYER+G L     GGD++A SL FLC TVNV
Subjt:  SDSVRRVWTLQDQVQLSLSLFCVDYYERNGCL-----GGDAAAPSLRFLCKTVNV

A0A6J1C339 F-box protein SNE-like

8.7e-60

76.1

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Query:  MQRNAPREDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL
        MQRNA  ++N     K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS++R VVLALGGYKRLYMLCLRP+L
Subjt:  MQRNAPREDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL

Query:  SRLN--RSDSVRRVWTLQDQVQLSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        +  N  RS  VRRV TLQD +QLSLSLF VD YER+G + GD  AAAPSLRFLCK VNV
Subjt:  SRLN--RSDSVRRVWTLQDQVQLSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

A0A6J1GK18 F-box protein SNE-like

4.6e-69

86.79

Show/hide

Query:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAP     R++N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        LSRLNRS  V RV TLQDQVQ LSLSLFCVDYYERNG LGGD  AAAPSLRFLCK VNV
Subjt:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

A0A6J1HXD0 F-box protein SNE-like

3.0e-68

86.16

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Query:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAP     R++N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAP-----REDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV
        LSRLNRS  V RV TLQDQVQ LSLSLFCVDYYERNG LGGD  AAAPSLRFLCK VNV
Subjt:  LSRLNRSDSVRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGD--AAAPSLRFLCKTVNV

M5WSV2 F-box domain-containing protein

2.4e-57

75.48

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Query:  QRNAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR
        Q+    ED  K+ KF INDH+DIL EILKRLDGPSL  AACVCRLW  LARN DSLWEHLCFRHVSSPPPSSVRPVV+ALGGYKRLY +C+RPVLSRL+ 
Subjt:  QRNAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR

Query:  SDSVRRVWTLQDQVQLSLSLFCVDYYERNGCL-----GGDAAAPSLRFLCKTVNV
        SD VRRVWT +D+VQLSLSLFCVDYYER+G L     GGDA+A SL FLC TVNV
Subjt:  SDSVRRVWTLQDQVQLSLSLFCVDYYERNGCL-----GGDAAAPSLRFLCKTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.0e-12

40.17

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Query:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVRPVVLALGGYKRLYMLCLRPVLSR---LNRSDSVRR--VWTLQDQV
        D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +R VVL+LGG++RL+ + +RP+  R   + R    R+  V   +DQV
Subjt:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVRPVVLALGGYKRLYMLCLRPVLSR---LNRSDSVRR--VWTLQDQV

Query:  QLSLSLFCVDYYERNGC
        QLSLSLF + +++   C
Subjt:  QLSLSLFCVDYYERNGC

Q9LUB6 F-box protein SNE

9.6e-40

60.67

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Query:  NAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSD
        N  R+  N+   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  S+R VV ALGGY+ LY LC+RPVL+RL    
Subjt:  NAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSD

Query:  SVRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAPSLRFLCKTVNV
          + +WT +DQ+QLSLSL+CV YYER   G   GDA   SL FL K VNV
Subjt:  SVRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAPSLRFLCKTVNV

Q9STX3 F-box protein GID2

1.4e-11

34.62

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Query:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL
        + NKK+K +  + +       +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +R VVLALGG++RL+ L L P LS+ 
Subjt:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL

Query:  NRSDSVRRVWTLQDQVQLSLSLFCVDYYER
        N      R    +D+++L+LSL  + YYE+
Subjt:  NRSDSVRRVWTLQDQVQLSLSLFCVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.0e-12

34.62

Show/hide

Query:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL
        + NKK+K +  + +       +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +R VVLALGG++RL+ L L P LS+ 
Subjt:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL

Query:  NRSDSVRRVWTLQDQVQLSLSLFCVDYYER
        N      R    +D+++L+LSL  + YYE+
Subjt:  NRSDSVRRVWTLQDQVQLSLSLFCVDYYER

AT5G48170.1 F-box family protein

6.8e-41

60.67

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Query:  NAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSD
        N  R+  N+   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  S+R VV ALGGY+ LY LC+RPVL+RL    
Subjt:  NAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSD

Query:  SVRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAPSLRFLCKTVNV
          + +WT +DQ+QLSLSL+CV YYER   G   GDA   SL FL K VNV
Subjt:  SVRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAPSLRFLCKTVNV

Sequences

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CDS sequence

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ATGATGCAGCGAAATGCGCCTCGAGAAGACAACAACAAGAAAATCAAATTCTCAATCAACGATCACCTCGACATCCTCACCGAAATCCTCAAGCGACTCGACGGCCCCTC
CCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCACCTCTGCTTCCGCCACGTCTCCTCTCCGCCGCCCTCCT
CCGTCCGCCCTGTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTATATGCTCTGCCTTCGTCCTGTCCTCAGCCGATTGAATCGCTCCGACTCGGTCCGCCGCGTTTGG
ACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGCCTCGGCGGCGATGCCGCGGCTCCGTCGCTGCGGTTCCTCTG
CAAAACGGTGAACGTATAA

mRNA sequence

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Protein sequence

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MMQRNAPREDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSVRRVW
TLQDQVQLSLSLFCVDYYERNGCLGGDAAAPSLRFLCKTVNV

Lag0014756 (gene) of Sponge gourd (AG-4) v1 genome