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Lag0014820 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014820
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA helicase
Genome locationchr12:4965928..4968978
RNA-Seq ExpressionLag0014820
SyntenyLag0014820
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domainsIPR036388 - Winged helix-like DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY88536.1 DNA helicase [Actinidia rufa]1.4e-1630.34Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------
        Y VIPK KKCV+DID FIK+NHFDECGI+YCLSRMDCEKVAE LQ                         S  ++ ++  T+ F                
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------

Query:  ----------------------------------------------QSRLKA------------------------------------------------
                                                      QS + +                                                
Subjt:  ----------------------------------------------QSRLKA------------------------------------------------

Query:  --------------TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT
                      T SEASRILHHLV+ D LV +V+K+DIYGS+SS+LKVNESKA  L++GGQ+IT
Subjt:  --------------TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT

KAF9602134.1 hypothetical protein IFM89_025179 [Coptis chinensis]1.2e-1833.6Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ------------------------------------VSTSQMFVL----------
        Y VIPK K C+DDID F+KENHFDECGI+YCLSRMDCEKVAE LQ                                    VST++M VL          
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ------------------------------------VSTSQMFVL----------

Query:  ----------------SFTILFQS-----RLKATIS----------------------------------------------------------------
                        S  +L+       R+K  IS                                                                
Subjt:  ----------------SFTILFQS-----RLKATIS----------------------------------------------------------------

Query:  -----EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQR
             EASRIL HLVIEDVLV EV+K+D+YGSVSS+LKVNESKA  L +GG++
Subjt:  -----EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQR

KAG2396354.1 ATP-dependent DNA helicase Q-like [Vigna angularis]1.7e-1731.2Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQVSTSQM-------------------------------------------------
        Y V+PK KKC++DID FI+ENHFDECGI+YCLSRMDCEKVA +LQ+    M                                                 
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQVSTSQM-------------------------------------------------

Query:  ------------------------------------------------------------FVLSFTILFQSRLKATIS-----------EASRILHHLVI
                                                                    +  SF+ + +     T+S           EASRILHHLV+
Subjt:  ------------------------------------------------------------FVLSFTILFQSRLKATIS-----------EASRILHHLVI

Query:  EDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNG
        ED+LV EV+K+D YGSVSS+LKVNE K  +LF G
Subjt:  EDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNG

KAG6576984.1 ATP-dependent DNA helicase Q-like 4A, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1629.33Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------
        Y V+PK KKCVDDID FIK+NHFDECGIVYCLSRMDCEKVAE LQ                         S  ++ ++  T+ F                
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------QSRLKATI---------------------------------SEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT
                 + LK+T                                  SEASRILHHLVIED+ V EVRK+DIYGSVSSLLKVNESK  SL NG QRIT
Subjt:  --------QSRLKATI---------------------------------SEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT

XP_008456059.1 PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo]1.1e-1629.61Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------
        Y VIPK KKCVDDID FIKENHFDECGIVYCLSRMDCEKVAE LQ                         S  ++ ++  T+ F                
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------

Query:  ---------QSRLKATI-----------------------------------------------------------------------------------
                 Q R+K  I                                                                                   
Subjt:  ---------QSRLKATI-----------------------------------------------------------------------------------

Query:  -----------------------------------------------------SEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGG
                                                             S+ASRILH+LVIED+LV EV+KNDIYGSVSSLLKVNE+K  SL NGG
Subjt:  -----------------------------------------------------SEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGG

Query:  QRIT
        QRIT
Subjt:  QRIT

TrEMBL top hitse value%identityAlignment
A0A1S3C1X6 DNA helicase5.3e-1729.61Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------
        Y VIPK KKCVDDID FIKENHFDECGIVYCLSRMDCEKVAE LQ                         S  ++ ++  T+ F                
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------

Query:  ---------QSRLKATI-----------------------------------------------------------------------------------
                 Q R+K  I                                                                                   
Subjt:  ---------QSRLKATI-----------------------------------------------------------------------------------

Query:  -----------------------------------------------------SEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGG
                                                             S+ASRILH+LVIED+LV EV+KNDIYGSVSSLLKVNE+K  SL NGG
Subjt:  -----------------------------------------------------SEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGG

Query:  QRIT
        QRIT
Subjt:  QRIT

A0A6A1V7A2 DNA helicase5.8e-1678.85Show/hide
Query:  HCSCSFRYPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ
        HC   +RY VIPK KKC+DDID F+KENHFDECGI+YCLSRMDCEKVAE LQ
Subjt:  HCSCSFRYPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ

A0A6A1V7A2 DNA helicase2.2e-0767.35Show/hide
Query:  EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRI
        EASRIL HLV ED L+ +V+K+D+YGSVSS+LKVNESKA +L  GG+ I
Subjt:  EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRI

A0A6A1V7A2 DNA helicase1.3e-1582.98Show/hide
Query:  FRYPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ
        FRY V+PK KKC+DDID FIK+NHFDECGI+YCLSRMDCEKVAE LQ
Subjt:  FRYPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ

A0A6J1D6B6 DNA helicase4.5e-1629.14Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV-------------STSQMFV----------------------------------
        Y VIPK KKCVDDID FIKENHFDECGIVYCLSRMDCEKVAE LQ              ST + F+                                  
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV-------------STSQMFV----------------------------------

Query:  --------------------LSFTILFQS-----RLKATI------------------------------------------------------------
                             S  +L+ S     R+K  I                                                            
Subjt:  --------------------LSFTILFQS-----RLKATI------------------------------------------------------------

Query:  ----------------------------------------------------------------------------SEASRILHHLVIEDVLVGEVRKND
                                                                                    SEASRILHHLVIED+L  EVRK+D
Subjt:  ----------------------------------------------------------------------------SEASRILHHLVIEDVLVGEVRKND

Query:  IYGSVSSLLKVNESKAHSLFNGGQRI
        IYGSVSSLLKVNESKAH+LFNGGQRI
Subjt:  IYGSVSSLLKVNESKAHSLFNGGQRI

A0A7J0EQR9 DNA helicase6.9e-1730.34Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------
        Y VIPK KKCV+DID FIK+NHFDECGI+YCLSRMDCEKVAE LQ                         S  ++ ++  T+ F                
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV------------------------STSQMFVLSFTILF----------------

Query:  ----------------------------------------------QSRLKA------------------------------------------------
                                                      QS + +                                                
Subjt:  ----------------------------------------------QSRLKA------------------------------------------------

Query:  --------------TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT
                      T SEASRILHHLV+ D LV +V+K+DIYGS+SS+LKVNESKA  L++GGQ+IT
Subjt:  --------------TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT

SwissProt top hitse value%identityAlignment
A8WK63 Putative ATP-dependent DNA helicase Q12.2e-0443.4Show/hide
Query:  SFRYPVIPKP---KKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQVS
        +  Y V+ KP    +CV+ I   IK     + GI+YCLSR DCEK+A+SL+ +
Subjt:  SFRYPVIPKP---KKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQVS

Q8L840 ATP-dependent DNA helicase Q-like 4A2.5e-1680Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ
        Y V+PK KKC++DID FIKENHFDECGI+YCLSRMDCEKV+E LQ
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ

Q8L840 ATP-dependent DNA helicase Q-like 4A3.5e-1067.35Show/hide
Query:  EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRI
        E SRILH+LV ED+LV +VRK+D+YGSVSSLL+VN +KA  LF+G Q I
Subjt:  EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRI

Q9DEY9 Bloom syndrome protein homolog7.6e-0542.86Show/hide
Query:  SFRYPVIP-KPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ
        + +Y V+P KPK+   D   +IK++H ++ GI+YCLSR +C+ +A++LQ
Subjt:  SFRYPVIP-KPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ

Q9FT70 ATP-dependent DNA helicase Q-like 4B1.6e-1573.91Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV
        Y V+PK  KC++DID FI+ENHFDECGI+YCLSRMDCEKV E+L+V
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV

Q9FT70 ATP-dependent DNA helicase Q-like 4B1.1e-1169.81Show/hide
Query:  TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT
        T SEASRILH+LV ED+L   V+K+++YGSVSSLLKVN SKA SL +GGQ IT
Subjt:  TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT

Q9TXJ8 Putative ATP-dependent DNA helicase Q15.8e-0543.14Show/hide
Query:  SFRYPVIPKP---KKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ
        + +Y V+ KP    +C ++I   IK +   + GI+YCLSR DCEKVA++L+
Subjt:  SFRYPVIPKP---KKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ

Arabidopsis top hitse value%identityAlignment
AT1G10930.1 DNA helicase (RECQl4A)1.8e-1780Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ
        Y V+PK KKC++DID FIKENHFDECGI+YCLSRMDCEKV+E LQ
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQ

AT1G10930.1 DNA helicase (RECQl4A)2.5e-1167.35Show/hide
Query:  EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRI
        E SRILH+LV ED+LV +VRK+D+YGSVSSLL+VN +KA  LF+G Q I
Subjt:  EASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRI

AT1G60930.1 RECQ helicase L4B1.2e-1673.91Show/hide
Query:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV
        Y V+PK  KC++DID FI+ENHFDECGI+YCLSRMDCEKV E+L+V
Subjt:  YPVIPKPKKCVDDIDMFIKENHFDECGIVYCLSRMDCEKVAESLQV

AT1G60930.1 RECQ helicase L4B7.8e-1369.81Show/hide
Query:  TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT
        T SEASRILH+LV ED+L   V+K+++YGSVSSLLKVN SKA SL +GGQ IT
Subjt:  TISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCAGGCATTGGAGCTGATTGTCCCATGCAAGCAGGCATTGGAGCTCAACTGGATTGTTCGGAGAATTTTAAGAAGATTGTTGGAACATCCAAAAGACAACGCAG
ATCCCTGCTTGCCACAAGAAAACGGTGGATGGGAGAAGATAAGGAGTTCTTCCCCATCTTACTTGGAGCCAATACACGGATACTTTCATTCTATTTACTCGATCACTGCT
CTTGCAGTTTCAGGTACCCTGTGATTCCAAAGCCTAAGAAATGTGTGGATGATATCGATATGTTCATCAAGGAAAACCACTTTGATGAATGTGGGATTGTTTACTGCCTT
TCAAGAATGGACTGTGAGAAGGTTGCTGAAAGTTTACAGGTATCAACAAGCCAGATGTTCGTTTTGTCATTCACCATTCTCTTCCAAAGTCGATTGAAGGCTACCATCAG
TGAAGCATCCCGCATATTGCATCATCTTGTTATTGAGGATGTTCTTGTGGGAGAAGTGAGGAAAAATGATATTTATGGATCTGTCTCATCCTTACTGAAGGTGAACGAAT
CCAAGGCTCACAGTCTCTTTAATGGAGGGCAGCGAATTACATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCAGGCATTGGAGCTGATTGTCCCATGCAAGCAGGCATTGGAGCTCAACTGGATTGTTCGGAGAATTTTAAGAAGATTGTTGGAACATCCAAAAGACAACGCAG
ATCCCTGCTTGCCACAAGAAAACGGTGGATGGGAGAAGATAAGGAGTTCTTCCCCATCTTACTTGGAGCCAATACACGGATACTTTCATTCTATTTACTCGATCACTGCT
CTTGCAGTTTCAGGTACCCTGTGATTCCAAAGCCTAAGAAATGTGTGGATGATATCGATATGTTCATCAAGGAAAACCACTTTGATGAATGTGGGATTGTTTACTGCCTT
TCAAGAATGGACTGTGAGAAGGTTGCTGAAAGTTTACAGGTATCAACAAGCCAGATGTTCGTTTTGTCATTCACCATTCTCTTCCAAAGTCGATTGAAGGCTACCATCAG
TGAAGCATCCCGCATATTGCATCATCTTGTTATTGAGGATGTTCTTGTGGGAGAAGTGAGGAAAAATGATATTTATGGATCTGTCTCATCCTTACTGAAGGTGAACGAAT
CCAAGGCTCACAGTCTCTTTAATGGAGGGCAGCGAATTACATAA
Protein sequenceShow/hide protein sequence
MQAGIGADCPMQAGIGAQLDCSENFKKIVGTSKRQRRSLLATRKRWMGEDKEFFPILLGANTRILSFYLLDHCSCSFRYPVIPKPKKCVDDIDMFIKENHFDECGIVYCL
SRMDCEKVAESLQVSTSQMFVLSFTILFQSRLKATISEASRILHHLVIEDVLVGEVRKNDIYGSVSSLLKVNESKAHSLFNGGQRIT