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Lag0014863 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014863
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionExopolygalacturonase-like
Genome locationchr12:5327529..5329165
RNA-Seq ExpressionLag0014863
SyntenyLag0014863
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.1e-4158.54Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQALA---------------------------------RVLLKFQVEGTLQAPAHPK
        MG  +NFVALLS+LLLLVS +K QS   VFD+TKYGAKPN D+T ALA                                 +  ++ Q+EGTLQAPA PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQALA---------------------------------RVLLKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGL+LLEY+D+LT+SGTGV DGQGKAGWEKNDCH KK C KLPM LK NFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

KAA0046190.1 exopolygalacturonase-like [Cucumis melo var. makuwa]7.7e-4461.59Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK
        MG R+NF   LSLL LL S  KGQS   VFDVT+YGAKPNTDIT AL             ++VL                    ++ QV+GTLQAP  PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGLV+LEYID+LTLSGTGVFDGQGK GWEKNDCH+KKIC KLPMTLKFNFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

TYK14158.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.4e-4059.76Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK
        MG R+NF   LSLL LL S  KGQS   VFDVT+YGAKPNTDIT AL             ++VL                    ++ QV+GTLQAP  PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGLV+LEYID+LTLSGTGVFDGQGK GWEKNDCH+KKIC KLPM   FNFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

XP_004140444.1 exopolygalacturonase [Cucumis sativus]1.7e-4664.6Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQSVFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPKGDG
        MG R NFVA LSLL LL S  KGQSVFDVT+YGAKPNTDIT AL             ++VL                    ++ QV+GTLQAP  PKGDG
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQSVFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPKGDG

Query:  LVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        LV+LEYID+LTLSGTGVFDGQGKAGWEKNDCH+KKIC KLPMTLKFNFVTNS+  DITSLD
Subjt:  LVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

XP_038895545.1 exopolygalacturonase-like [Benincasa hispida]2.5e-4259.51Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS--VFDVTKYGAKPNTDITQALA-------------RVL--------------------LKFQVEGTLQAPAHPKG
        MG R+NF+AL+ LLLLLVS AK QS  +FDVT +GAKPN DIT ALA             +VL                    ++FQ+EGTLQAPA PKG
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS--VFDVTKYGAKPNTDITQALA-------------RVL--------------------LKFQVEGTLQAPAHPKG

Query:  DGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        DGL++LEY+D+LT+SGTGV DGQGK GWEKNDCH KKIC KLPM LKFNF+TNS+  DITSLD
Subjt:  DGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

TrEMBL top hitse value%identityAlignment
A0A5A7TRZ0 Exopolygalacturonase-like1.1e-4057.32Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQALA---------------------------------RVLLKFQVEGTLQAPAHPK
        MG  +NFV LL +LLLLVS +K QS   VFD+TKYGAKPN D+T ALA                                 +  ++ Q+EGTLQAPA PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQALA---------------------------------RVLLKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGL+LLEY+D+LT+SGTGV DGQGKAGWEKNDCH KK C KLPM LK NFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

A0A5A7TSR0 Exopolygalacturonase-like3.7e-4461.59Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK
        MG R+NF   LSLL LL S  KGQS   VFDVT+YGAKPNTDIT AL             ++VL                    ++ QV+GTLQAP  PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGLV+LEYID+LTLSGTGVFDGQGK GWEKNDCH+KKIC KLPMTLKFNFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

A0A5D3BWP4 Exopolygalacturonase-like7.3e-4056.71Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQALA---------------------------------RVLLKFQVEGTLQAPAHPK
        MG  +NFVALL +LLLLVS  K QS   V D+TK+GAKPN D+T ALA                                 +  ++ Q+EGTLQAPA PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQALA---------------------------------RVLLKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGL+LLEY+D+LT+SGTGV DGQGKAGWEKNDCH KK C KLPM LK NFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

A0A5D3CSI1 Exopolygalacturonase-like6.6e-4159.76Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK
        MG R+NF   LSLL LL S  KGQS   VFDVT+YGAKPNTDIT AL             ++VL                    ++ QV+GTLQAP  PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQS---VFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGLV+LEYID+LTLSGTGVFDGQGK GWEKNDCH+KKIC KLPM   FNFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

A0A5D3DYI3 Exopolygalacturonase-like8.6e-4158.54Show/hide
Query:  MGFRTNFVALLSLLLLLVSIAKGQ---SVFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK
        MG  +NFVALL +LLLLVS +K Q   SVFD+TKYGAKPN D+T AL             ++VL                    ++ Q+EGTLQAPA PK
Subjt:  MGFRTNFVALLSLLLLLVSIAKGQ---SVFDVTKYGAKPNTDITQAL-------------ARVL--------------------LKFQVEGTLQAPAHPK

Query:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        GDGL+LLEY+D+LT+SGTGV DGQGKAGWEKNDCH KK C KLPM LK NFVTNS+  DITSLD
Subjt:  GDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.2e-1553.09Show/hide
Query:  QVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQK-KICIKLPMTLKFNFVTNSLANDITSLD
        Q++GTL+APA P   KG G + L  ID LT+ G GVFDGQGK+ W +NDCH+   IC  L M L+   VTNS+  D+T+LD
Subjt:  QVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQK-KICIKLPMTLKFNFVTNSLANDITSLD

Q05967 Polygalacturonase1.2e-1535.29Show/hide
Query:  LLLLLVSIAKGQS-VFDVTKYGAKPNTDITQALARVL---------------------------------LKFQVEGTLQAPAHP---KGDGLVLLEYID
        +LL L    + Q+ VFD+TKYGA  N DI++AL                                     L+ Q++ TL+AP+ P   K    + +  +D
Subjt:  LLLLLVSIAKGQS-VFDVTKYGAKPNTDITQALARVL---------------------------------LKFQVEGTLQAPAHP---KGDGLVLLEYID

Query:  RLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        + T+SG G+ DGQ  A WE   C Q K C KLP  L FN +TNS   DIT+LD
Subjt:  RLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

Q39766 Polygalacturonase5.6e-1342.17Show/hide
Query:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        ++  V+GT+QAPA P   K    V    ++   + G G+FDGQG   +EKN C  ++   KLP+ ++F+FVTN+L  DITS D
Subjt:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

Q6H9K0 Exopolygalacturonase (Fragment)3.0e-1445.68Show/hide
Query:  FQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        FQ++G ++APA P   K DG V    ID LT+SGTG  DGQG+  W KN+C +   C    M L+F+F+ +++  DITSL+
Subjt:  FQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

W8P8Q3 Probable galacturan 1,4-alpha-galacturonidase SALK61.7e-1433.13Show/hide
Query:  NFVALLSLLLLLVSIAKGQSVFDVTKYGAKPNTDITQAL---------------------------------ARVLLKFQVEGTLQAP---AHPKG-DGL
        N   L++L  L VS+A+ Q   D+TK+GAKPN D T AL                                  +  L  ++ G  +AP   A  KG D  
Subjt:  NFVALLSLLLLLVSIAKGQSVFDVTKYGAKPNTDITQAL---------------------------------ARVLLKFQVEGTLQAP---AHPKG-DGL

Query:  VLLEYIDRLT---LSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        V +E +  LT   L   G FDGQG+A W++N C Q  +C  LP   +FN +TN+  + I SL+
Subjt:  VLLEYIDRLT---LSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

Arabidopsis top hitse value%identityAlignment
AT1G43080.1 Pectin lyase-like superfamily protein3.8e-1749.4Show/hide
Query:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        ++F ++GTL APA+P   K D  +   YI+ L++SG+G  DGQGK  W  NDCH+   C KL MT+ F FV NS   DITSL+
Subjt:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

AT1G43090.1 Pectin lyase-like superfamily protein3.8e-1749.4Show/hide
Query:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        ++F ++GTL APA+P   K D  +   YI+ L++SG+G  DGQGK  W  NDCH+   C KL MT+ F FV NS   DITSL+
Subjt:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

AT2G15470.1 Pectin lyase-like superfamily protein6.6e-1749.4Show/hide
Query:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        ++F ++GTL APA+P   K D  +   YI+ L++SG+G  DGQGK  W  NDCH    C KL MT+ F FV NS   DITSL+
Subjt:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

AT2G40310.1 Pectin lyase-like superfamily protein5.0e-1749.4Show/hide
Query:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        ++F ++GTL APA+P   K D  +   YI+ L++SG+G  DGQGK  W  NDCH+   C KL MT+ F FV NS   DITSL+
Subjt:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD

AT4G13760.1 Pectin lyase-like superfamily protein3.8e-1749.4Show/hide
Query:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD
        ++F ++GTL APA+P   K D  +  +YI+ L++SG+G  DGQGK  W  NDCH+   C KL MT+ F FV NS   DITSL+
Subjt:  LKFQVEGTLQAPAHP---KGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMTLKFNFVTNSLANDITSLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCAGAACAAACTTTGTAGCATTACTATCTTTGCTATTATTGTTGGTGTCTATTGCTAAAGGTCAATCTGTTTTTGATGTCACTAAGTATGGTGCCAAACCTAA
TACTGATATTACTCAAGCCCTTGCAAGAGTCCTATTGAAGTTTCAAGTCGAAGGGACGTTACAAGCTCCTGCCCACCCAAAAGGAGATGGATTGGTTCTTTTGGAATATA
TTGATCGATTGACATTGTCAGGCACTGGAGTGTTTGATGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTGCCACCAGAAGAAAATATGTATCAAGCTTCCCATGACC
TTGAAGTTCAATTTCGTCACCAATTCGTTAGCGAATGACATAACTTCGTTGGATATTTCTGTCATTACAACCTCTTTCCCGCCTTCGACTTCAAAGAGTAACCAGTTCAC
TACTCTAACGGATGGGTCCATAAAACCCAAACGGGTGATTTTGGACCACCCCGATGCACAAGGAGTTGACGAGGACAACCGGGCAGAAATCAGACCGGAAGATGGACCCA
AGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCGACCCCCTGCTCGGCTTCTGCCCAAGGCCAAGGCCGAGCACATGGTCGGCCTC
GGCATTTGGCCAAGCCCGTCGACTTCGTTTGGTCCCACCGCCTCTGGCTGCCCCGGTTTCGCCTGGTTTGTTCCGAAACGCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCAGAACAAACTTTGTAGCATTACTATCTTTGCTATTATTGTTGGTGTCTATTGCTAAAGGTCAATCTGTTTTTGATGTCACTAAGTATGGTGCCAAACCTAA
TACTGATATTACTCAAGCCCTTGCAAGAGTCCTATTGAAGTTTCAAGTCGAAGGGACGTTACAAGCTCCTGCCCACCCAAAAGGAGATGGATTGGTTCTTTTGGAATATA
TTGATCGATTGACATTGTCAGGCACTGGAGTGTTTGATGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTGCCACCAGAAGAAAATATGTATCAAGCTTCCCATGACC
TTGAAGTTCAATTTCGTCACCAATTCGTTAGCGAATGACATAACTTCGTTGGATATTTCTGTCATTACAACCTCTTTCCCGCCTTCGACTTCAAAGAGTAACCAGTTCAC
TACTCTAACGGATGGGTCCATAAAACCCAAACGGGTGATTTTGGACCACCCCGATGCACAAGGAGTTGACGAGGACAACCGGGCAGAAATCAGACCGGAAGATGGACCCA
AGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCGACCCCCTGCTCGGCTTCTGCCCAAGGCCAAGGCCGAGCACATGGTCGGCCTC
GGCATTTGGCCAAGCCCGTCGACTTCGTTTGGTCCCACCGCCTCTGGCTGCCCCGGTTTCGCCTGGTTTGTTCCGAAACGCCTCTGA
Protein sequenceShow/hide protein sequence
MGFRTNFVALLSLLLLLVSIAKGQSVFDVTKYGAKPNTDITQALARVLLKFQVEGTLQAPAHPKGDGLVLLEYIDRLTLSGTGVFDGQGKAGWEKNDCHQKKICIKLPMT
LKFNFVTNSLANDITSLDISVITTSFPPSTSKSNQFTTLTDGSIKPKRVILDHPDAQGVDEDNRAEIRPEDGPKRRNRQVGRAKTEGVGLLARPPARLLPKAKAEHMVGL
GIWPSPSTSFGPTASGCPGFAWFVPKRL