; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014879 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014879
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionendoribonuclease Dicer homolog 1
Genome locationchr12:5504906..5505724
RNA-Seq ExpressionLag0014879
SyntenyLag0014879
Gene Ontology termsGO:0006955 - immune response (biological process)
GO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0051607 - defense response to virus (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR005034 - Dicer dimerisation domain
IPR038248 - Dicer dimerisation domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008437750.1 PREDICTED: endoribonuclease Dicer homolog 1 [Cucumis melo]2.4e-4171.09Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE+LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEE+EKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

XP_022148518.1 endoribonuclease Dicer homolog 1 [Momordica charantia]4.8e-4272.66Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEEREKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

XP_022938349.1 endoribonuclease Dicer homolog 1 [Cucurbita moschata]1.6e-4071.65Show/hide
Query:  GTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE-----------------------------
        GTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE                             
Subjt:  GTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE-----------------------------

Query:  -----DKGSGEEREKVEQNDDGDPLPG
             DKGSGEEREKVEQ DDGDPLPG
Subjt:  -----DKGSGEEREKVEQNDDGDPLPG

XP_023539589.1 endoribonuclease Dicer homolog 1 [Cucurbita pepo subsp. pepo]1.6e-4071.65Show/hide
Query:  GTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE-----------------------------
        GTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE                             
Subjt:  GTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE-----------------------------

Query:  -----DKGSGEEREKVEQNDDGDPLPG
             DKGSGEEREKVEQ DDGDPLPG
Subjt:  -----DKGSGEEREKVEQNDDGDPLPG

XP_038883493.1 endoribonuclease Dicer homolog 1 [Benincasa hispida]1.2e-4069.53Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRH++PGGPTEYSCKLQLPCNAPFE+LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEE+EKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

TrEMBL top hitse value%identityAlignment
A0A0A0L3I6 Uncharacterized protein7.5e-4170.31Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        P TVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE+LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEE+EKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

A0A1S3AUV8 endoribonuclease Dicer homolog 11.2e-4171.09Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE+LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEE+EKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

A0A5D3DB28 Endoribonuclease Dicer-like protein 11.2e-4171.09Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE+LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEE+EKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

A0A6J1D4B3 endoribonuclease Dicer homolog 12.3e-4272.66Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSGEEREKVEQNDDGDPLPG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

A0A6J1FDU0 endoribonuclease Dicer homolog 17.5e-4171.65Show/hide
Query:  GTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE-----------------------------
        GTVYQVESTGA+VSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE                             
Subjt:  GTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE-----------------------------

Query:  -----DKGSGEEREKVEQNDDGDPLPG
             DKGSGEEREKVEQ DDGDPLPG
Subjt:  -----DKGSGEEREKVEQNDDGDPLPG

SwissProt top hitse value%identityAlignment
P34529 Endoribonuclease dcr-15.2e-0740Show/hide
Query:  YQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE
        Y VE TGA + +++A+ L++ YCS+LPSD ++ L P   ++  E+  G T+Y  +L LP N+P +
Subjt:  YQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE

Q10HL3 Endoribonuclease Dicer homolog 2a2.5e-0945.33Show/hide
Query:  TVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSG
        T Y+VEST AIV+LNS+V L+HF+CS+LPSD Y    P F +   +K  G    +C L LP ++P + +  +G G
Subjt:  TVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSG

Q3EBC8 Endoribonuclease Dicer homolog 25.2e-0737.33Show/hide
Query:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE
        +++VESTGA V+L+S+V L++ YCS+LPSD Y    P F + + +        SC L LP + P +E++ + + +
Subjt:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE

Q8LMR2 Endoribonuclease Dicer homolog 19.2e-3658.21Show/hide
Query:  APVLLRPGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------
        +PV   PG++YQVESTGA+VSLNSAVGL+HFYCSQLPSDRYSIL PEF+M ++EKPGG  EYSCKLQLPCNAPFE+LE                      
Subjt:  APVLLRPGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------

Query:  ------------DKGSGEEREKVEQNDDGDPLPG
                    D+GSG E EK EQND+G+PLPG
Subjt:  ------------DKGSGEEREKVEQNDDGDPLPG

Q9SP32 Endoribonuclease Dicer homolog 15.9e-3557.81Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVY+VE+TGA+VSLNSAVGLVHFYCSQLP DRY+ILRPEF M +HEKPGG TEYSC+LQLPCNAPFE LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSG++ EK +Q+D+G+P+PG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

Arabidopsis top hitse value%identityAlignment
AT1G01040.1 dicer-like 14.2e-3657.81Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVY+VE+TGA+VSLNSAVGLVHFYCSQLP DRY+ILRPEF M +HEKPGG TEYSC+LQLPCNAPFE LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSG++ EK +Q+D+G+P+PG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

AT1G01040.2 dicer-like 14.2e-3657.81Show/hide
Query:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------
        PGTVY+VE+TGA+VSLNSAVGLVHFYCSQLP DRY+ILRPEF M +HEKPGG TEYSC+LQLPCNAPFE LE                            
Subjt:  PGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELE----------------------------

Query:  ------DKGSGEEREKVEQNDDGDPLPG
              DKGSG++ EK +Q+D+G+P+PG
Subjt:  ------DKGSGEEREKVEQNDDGDPLPG

AT3G03300.1 dicer-like 23.7e-0837.33Show/hide
Query:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE
        +++VESTGA V+L+S+V L++ YCS+LPSD Y    P F + + +        SC L LP + P +E++ + + +
Subjt:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE

AT3G03300.2 dicer-like 23.7e-0837.33Show/hide
Query:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE
        +++VESTGA V+L+S+V L++ YCS+LPSD Y    P F + + +        SC L LP + P +E++ + + +
Subjt:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE

AT3G03300.3 dicer-like 23.7e-0837.33Show/hide
Query:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE
        +++VESTGA V+L+S+V L++ YCS+LPSD Y    P F + + +        SC L LP + P +E++ + + +
Subjt:  VYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTATATTACTAGAGGTGGTGCACAAAACTCAATTGAATGTTCATTGTTCTGCTCCTGTGCTATTAAGACCAGGTACTGTGTATCAAGTTGAGTCAACTGGTGC
CATCGTTAGCTTAAATTCTGCTGTTGGTCTTGTCCATTTCTACTGCTCGCAGCTGCCTAGTGACAGGTATTCCATTCTTCGACCTGAGTTTGTGATGGTGAGGCATGAGA
AACCAGGCGGTCCAACTGAGTACTCTTGTAAGCTTCAACTTCCTTGTAATGCACCATTTGAGGAACTTGAAGACAAGGGAAGCGGAGAGGAGAGGGAAAAGGTAGAACAG
AATGATGATGGAGATCCGCTTCCTGGACTGCTAGACACAGGAGTTCTATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTATATTACTAGAGGTGGTGCACAAAACTCAATTGAATGTTCATTGTTCTGCTCCTGTGCTATTAAGACCAGGTACTGTGTATCAAGTTGAGTCAACTGGTGC
CATCGTTAGCTTAAATTCTGCTGTTGGTCTTGTCCATTTCTACTGCTCGCAGCTGCCTAGTGACAGGTATTCCATTCTTCGACCTGAGTTTGTGATGGTGAGGCATGAGA
AACCAGGCGGTCCAACTGAGTACTCTTGTAAGCTTCAACTTCCTTGTAATGCACCATTTGAGGAACTTGAAGACAAGGGAAGCGGAGAGGAGAGGGAAAAGGTAGAACAG
AATGATGATGGAGATCCGCTTCCTGGACTGCTAGACACAGGAGTTCTATCCTGA
Protein sequenceShow/hide protein sequence
MWSILLEVVHKTQLNVHCSAPVLLRPGTVYQVESTGAIVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEDKGSGEEREKVEQ
NDDGDPLPGLLDTGVLS