; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014881 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014881
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:5525778..5528635
RNA-Seq ExpressionLag0014881
SyntenyLag0014881
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
TYK13741.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.7e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein1.3e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.7e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein1.3e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein1.7e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.3e-1437.4Show/hide
Query:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL
        C R   + I HLF+ C  A ++    +        C LS   LC    ++K K++++++  N + +  W+IW ERNAR+F G   ++ EIW+D  +LA L
Subjt:  CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAAL

Query:  WSSNSKVFSCYDAASIAINWDAF
        W+S S +FS Y A+SIA+N +AF
Subjt:  WSSNSKVFSCYDAASIAINWDAF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGCGGTTCTAAGGGTTTTGCATTGGTGGGTTTCTTATTCTTCATCCTCCTCTTCTCCTCGGAGATGACTGCAGCAAGGAAGCTTTTCGCCGGAAAAAATGAAGC
AGAAGTGGCCATACATGAAGCCAGCCTCCCCATAGAAAATTCCAACCTCCCACCTTGCGTTCCCGGTCGGGGGAATGAGAGATTTTCTGGAAAGCTGAAATCAGAATGCG
GAATATTTTACGAGGTCACAGAGCTCCCGTCCTCAGTCATGGGGAATCAGTTTTTAATAATCTTTGGCAAGCCAGTATTCCTAAGAGGTGTAAATTCTTTATATGGACCT
TGTTCTAGAGGAAGCACTGAATCTATAGACCACCTCTTTGTTCATTGCAGTTGGGCTTCCGCCCTTCGGTATAAATTTAATTTAGCGACTGGTCTTCAAGCTCCATGTCC
TCTCTCGATTGACCATCTCTGTGCCGAAGCCTTCGCGTATAAAGTTAAATCCCAAAGAGATATCCTTTGTCGAAATTTCTTTGTCGCTTATACTTGGTCTATTTGGAAGG
AGAGGAACGCTAGAGTCTTTCAGGGAACCTCTTTCTCTATCTATGAGATCTGGGATGACTCCATCTCTCTTGCTGCCCTTTGGTCCTCTAACTCCAAGGTCTTTTCTTGT
TATGATGCGGCATCCATTGCTATTAATTGGGATGCCTTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGCGGTTCTAAGGGTTTTGCATTGGTGGGTTTCTTATTCTTCATCCTCCTCTTCTCCTCGGAGATGACTGCAGCAAGGAAGCTTTTCGCCGGAAAAAATGAAGC
AGAAGTGGCCATACATGAAGCCAGCCTCCCCATAGAAAATTCCAACCTCCCACCTTGCGTTCCCGGTCGGGGGAATGAGAGATTTTCTGGAAAGCTGAAATCAGAATGCG
GAATATTTTACGAGGTCACAGAGCTCCCGTCCTCAGTCATGGGGAATCAGTTTTTAATAATCTTTGGCAAGCCAGTATTCCTAAGAGGTGTAAATTCTTTATATGGACCT
TGTTCTAGAGGAAGCACTGAATCTATAGACCACCTCTTTGTTCATTGCAGTTGGGCTTCCGCCCTTCGGTATAAATTTAATTTAGCGACTGGTCTTCAAGCTCCATGTCC
TCTCTCGATTGACCATCTCTGTGCCGAAGCCTTCGCGTATAAAGTTAAATCCCAAAGAGATATCCTTTGTCGAAATTTCTTTGTCGCTTATACTTGGTCTATTTGGAAGG
AGAGGAACGCTAGAGTCTTTCAGGGAACCTCTTTCTCTATCTATGAGATCTGGGATGACTCCATCTCTCTTGCTGCCCTTTGGTCCTCTAACTCCAAGGTCTTTTCTTGT
TATGATGCGGCATCCATTGCTATTAATTGGGATGCCTTTTTGTAA
Protein sequenceShow/hide protein sequence
MSGGSKGFALVGFLFFILLFSSEMTAARKLFAGKNEAEVAIHEASLPIENSNLPPCVPGRGNERFSGKLKSECGIFYEVTELPSSVMGNQFLIIFGKPVFLRGVNSLYGP
CSRGSTESIDHLFVHCSWASALRYKFNLATGLQAPCPLSIDHLCAEAFAYKVKSQRDILCRNFFVAYTWSIWKERNARVFQGTSFSIYEIWDDSISLAALWSSNSKVFSC
YDAASIAINWDAFL