; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0014907 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014907
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPolyprotein
Genome locationchr12:5760765..5762161
RNA-Seq ExpressionLag0014907
SyntenyLag0014907
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5549868.1 hypothetical protein RHGRI_014986 [Rhododendron griersonianum]5.0e-0933.33Show/hide
Query:  DEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKH-------EANIVHDALVCVQSDRRCSN---HSSDWILDSAVSVHIASDRSLFT
        + +    SS  +  ++ ++EC YC KKGH K  C  +KFKE+ R KH          +  D  + V  D  C N     ++W++DS  S H+ S    FT
Subjt:  DEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKH-------EANIVHDALVCVQSDRRCSN---HSSDWILDSAVSVHIASDRSLFT

Query:  SFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
        S+  G    VRM N   SK  G  ++ L+   G KLV+
Subjt:  SFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

RVW14266.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.0e-0930.77Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        + + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

RVW42505.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.0e-0930.77Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        + + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

RVW84195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.0e-0930.77Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        + + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

RVW94144.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.3e-0931.47Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        K + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-0930.77Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        + + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-0930.77Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        + + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-0930.77Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        + + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0931.47Show/hide
Query:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD
        K + K     + S       ++ +VEC+YCHKKGH K  C  +KFKE  + K+     +D  V    +                +DW++DS  S H+ S 
Subjt:  KGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRC--MKFKEDQRRKHEANIVHDALVCVQSDR---------RCSNHSSDWILDSAVSVHIASD

Query:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
           FTS+  G    VRM N   SK  G  D+ L+   G KL++
Subjt:  RSLFTSFIGGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

A0A484L164 gag_pre-integrs domain-containing protein3.2e-0933.33Show/hide
Query:  NEPSSSSRKWENRNEVECFYCHKKGHFKSRCMKFKEDQRRKHE-----------ANIVHDALVCVQSDR-RCSNHSSDWILDSAVSVHIASDRSLFTSFI
        N  S S  K++N   VEC YCHKKGH    C K K   + K E           A  + D +V   +D    ++  S W++DS V+ H+ S +  FTS+ 
Subjt:  NEPSSSSRKWENRNEVECFYCHKKGHFKSRCMKFKEDQRRKHE-----------ANIVHDALVCVQSDR-RCSNHSSDWILDSAVSVHIASDRSLFTSFI

Query:  GGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV
         G + +++M N   S+  G   V L+ + G KLV+
Subjt:  GGHHDLVRMRNGRTSKTSGTRDVSLKIECGNKLVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGGGTGAAGATAAGGTTGATGAAGAAAATGAACCGAGTAGCAGTAGTAGAAAGTGGGAAAATAGGAATGAGGTAGAATGTTTTTACTGCCATAAGAAAGGTCA
CTTCAAGAGTCGGTGTATGAAGTTCAAAGAGGATCAAAGAAGAAAACATGAGGCAAATATAGTGCATGATGCCTTAGTTTGTGTTCAAAGTGACAGAAGGTGTAGTAACC
ACTCATCAGATTGGATATTAGACAGTGCAGTTTCTGTACACATAGCTTCAGATAGGAGTTTGTTCACATCATTCATAGGAGGGCATCATGATCTAGTGAGGATGAGGAAT
GGTAGAACCTCCAAAACTAGTGGGACTAGAGATGTTAGTCTGAAGATAGAGTGTGGAAATAAATTGGTAGTGGCAGTTGGCCACAGGAAGTCTACACTGTACAAATGTCA
GTTGAATGTTGCCAAAGGATCAAAGAGACAGTGGATGCCGGTTAAAACTGCAGAAGCTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAATGATAGTCGATTTCGATAAGT
CCGATCAAGATCCTTTAGTTCAAAAACAATTAGGAAGTCCAGGAAAGAAAGTTGATGGCTATCGTGAACCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAATCACTA
AGGCGAGTTGAGGCATCGAAGTGGAAGGTCAGAGCAGTTGCTAAGGTCAAAGGTCGGGTCTCTAGCTTGGTATTTTTAGCCTTGGAGTTTACCAAGAAGATCAGATATAA
CAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATCAAAGTTTTGTTGCAGTGGGACACAAAGTCGTATTTTGTCTCCAAGTGGGAGATTGTTAAGTTTTTGT
CTTGTGTGGAGACAAAATTGAAGAAGCTCACTTCATGTGCAAGAAAGAAGCTAGCTCACTTGGTGTGCAAGGAAGAAGCCACTTGGTGTGCAAGGAATAAGCCAAACTTG
GTGTGCAAGGATGATCCTAACCACCTTGGTGCACAAGGAAGAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGGGTGAAGATAAGGTTGATGAAGAAAATGAACCGAGTAGCAGTAGTAGAAAGTGGGAAAATAGGAATGAGGTAGAATGTTTTTACTGCCATAAGAAAGGTCA
CTTCAAGAGTCGGTGTATGAAGTTCAAAGAGGATCAAAGAAGAAAACATGAGGCAAATATAGTGCATGATGCCTTAGTTTGTGTTCAAAGTGACAGAAGGTGTAGTAACC
ACTCATCAGATTGGATATTAGACAGTGCAGTTTCTGTACACATAGCTTCAGATAGGAGTTTGTTCACATCATTCATAGGAGGGCATCATGATCTAGTGAGGATGAGGAAT
GGTAGAACCTCCAAAACTAGTGGGACTAGAGATGTTAGTCTGAAGATAGAGTGTGGAAATAAATTGGTAGTGGCAGTTGGCCACAGGAAGTCTACACTGTACAAATGTCA
GTTGAATGTTGCCAAAGGATCAAAGAGACAGTGGATGCCGGTTAAAACTGCAGAAGCTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAATGATAGTCGATTTCGATAAGT
CCGATCAAGATCCTTTAGTTCAAAAACAATTAGGAAGTCCAGGAAAGAAAGTTGATGGCTATCGTGAACCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAATCACTA
AGGCGAGTTGAGGCATCGAAGTGGAAGGTCAGAGCAGTTGCTAAGGTCAAAGGTCGGGTCTCTAGCTTGGTATTTTTAGCCTTGGAGTTTACCAAGAAGATCAGATATAA
CAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATCAAAGTTTTGTTGCAGTGGGACACAAAGTCGTATTTTGTCTCCAAGTGGGAGATTGTTAAGTTTTTGT
CTTGTGTGGAGACAAAATTGAAGAAGCTCACTTCATGTGCAAGAAAGAAGCTAGCTCACTTGGTGTGCAAGGAAGAAGCCACTTGGTGTGCAAGGAATAAGCCAAACTTG
GTGTGCAAGGATGATCCTAACCACCTTGGTGCACAAGGAAGAATGTAA
Protein sequenceShow/hide protein sequence
MTKGEDKVDEENEPSSSSRKWENRNEVECFYCHKKGHFKSRCMKFKEDQRRKHEANIVHDALVCVQSDRRCSNHSSDWILDSAVSVHIASDRSLFTSFIGGHHDLVRMRN
GRTSKTSGTRDVSLKIECGNKLVVAVGHRKSTLYKCQLNVAKGSKRQWMPVKTAEASCRGTVEPAAMIVDFDKSDQDPLVQKQLGSPGKKVDGYREPPVVRRSNELKKSL
RRVEASKWKVRAVAKVKGRVSSLVFLALEFTKKIRYNSCSGSRSLEFAKMIKVLLQWDTKSYFVSKWEIVKFLSCVETKLKKLTSCARKKLAHLVCKEEATWCARNKPNL
VCKDDPNHLGAQGRM