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Lag0014936 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014936
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:5987760..5988290
RNA-Seq ExpressionLag0014936
SyntenyLag0014936
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG63812.1 hypothetical protein EZV62_010806 [Acer yangbiense]2.6e-2245.31Show/hide
Query:  CGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI
        CG  PP AM  LCWN RGLGNP  + AL  LV K  P +IF+ ETK +  + E+I+  L Y+  F V SIGSSGGL++LWN +  VS+ S+S GHID  I
Subjt:  CGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI

Query:  IDQPVSWSSLAFMVTLKQTKDISRGNYW
          +   W   + M    +     R N+W
Subjt:  IDQPVSWSSLAFMVTLKQTKDISRGNYW

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]8.0e-1948.08Show/hide
Query:  MKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMIIDQPVSWS
        MK+LCWN  GLGNP   R L +LV + +PQ++F+ ETK +     R K +L ++   SV S G SGGLM+LWNS++ V I S S GHID++I D+  SW 
Subjt:  MKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMIIDQPVSWS

Query:  SLAF
           F
Subjt:  SLAF

XP_030925054.1 uncharacterized protein LOC115952115 [Quercus lobata]1.8e-1840.14Show/hide
Query:  TASKFRRDIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSI
        T  K  R+ GGG   APP  M  L WN RGLGNP+    L+ LV  + P++IF+METK +     RI   + Y ++F VP   + GGL + W +++ V +
Subjt:  TASKFRRDIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSI

Query:  NSYSEGHIDAMIIDQPV--SWSSLAFMVTLKQTKDISRGNYWKDSKT
         S+SE HIDA IID  V  +W    F    + T   SR N W   +T
Subjt:  NSYSEGHIDAMIIDQPV--SWSSLAFMVTLKQTKDISRGNYWKDSKT

XP_030970322.1 uncharacterized protein LOC115990651 [Quercus lobata]2.7e-1947.83Show/hide
Query:  MKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI
        M  L WN RGLGNPRA+  L HLVG + P+++F+METK    +   IK DLQY ++F+VPS+G SGGL ++W  + ++ + + S+ HIDA++
Subjt:  MKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI

XP_042974662.1 uncharacterized protein LOC122306298 [Carya illinoinensis]2.7e-1950.5Show/hide
Query:  MKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI--IDQPVS
        MKT+ WN+RGLGNPR +R L  LV +E P+V+F+METK    + ERI++ + +   F+VPS G SGGL +LW +E  +SI S+S  HIDA I  ID  + 
Subjt:  MKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI--IDQPVS

Query:  W
        W
Subjt:  W

TrEMBL top hitse value%identityAlignment
A0A2N9G1F9 Uncharacterized protein1.7e-2249.52Show/hide
Query:  DIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGH
        + G     APP+ M  L WN +GLGNP A+RAL H+V K+ P+V+F+METK D G+ E I++ L +++ F+VPS+G SGGL +LW ++ EV I +YS+ H
Subjt:  DIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGH

Query:  IDAMI
        IDA +
Subjt:  IDAMI

A0A2N9G8I6 Reverse transcriptase domain-containing protein1.7e-2249.52Show/hide
Query:  DIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGH
        + G     APP+ M  L WN +GLGNP A+RAL H+V K+ P+V+F+METK D G+ E I++ L +++ F+VPS+G SGGL +LW ++ EV I +YS+ H
Subjt:  DIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGH

Query:  IDAMI
        IDA +
Subjt:  IDAMI

A0A2N9HDH5 Uncharacterized protein5.7e-2349.04Show/hide
Query:  IGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHI
        +GGGC TAPP  M  + WN RGLGN RA+ AL +LV  + P+++F+METK D  K E I++ L+++  F+VPS+G SGGL +LWN + +++I ++S  HI
Subjt:  IGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHI

Query:  DAMI
        DA +
Subjt:  DAMI

A0A2N9HWG1 Reverse transcriptase domain-containing protein5.7e-2342.42Show/hide
Query:  GWRMLLTVTQTKDLKPTASKFRR----DIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVP
        GW+ L     ++  K  +S  R      +GGGC  APP  M  + WN RGLGN RA+ AL +LV  + P+++F+METK D  K E I++ L+++  F+VP
Subjt:  GWRMLLTVTQTKDLKPTASKFRR----DIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVP

Query:  SIGSSGGLMILWNSETEVSINSYSEGHIDAMI
        S+G SGGL +LWN + +++I ++S  HIDA +
Subjt:  SIGSSGGLMILWNSETEVSINSYSEGHIDAMI

A0A5C7I5K8 DUF4283 domain-containing protein1.3e-2245.31Show/hide
Query:  CGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI
        CG  PP AM  LCWN RGLGNP  + AL  LV K  P +IF+ ETK +  + E+I+  L Y+  F V SIGSSGGL++LWN +  VS+ S+S GHID  I
Subjt:  CGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWNSETEVSINSYSEGHIDAMI

Query:  IDQPVSWSSLAFMVTLKQTKDISRGNYW
          +   W   + M    +     R N+W
Subjt:  IDQPVSWSSLAFMVTLKQTKDISRGNYW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTGGCGAATGCTACTGACAGTGACACAAACAAAAGATCTAAAACCTACTGCTTCGAAGTTTCGGAGGGATATCGGCGGAGGCTGTGGAACAGCCCCGCCGGACGC
CATGAAAACCTTATGTTGGAACGCTCGAGGTTTGGGGAATCCTCGAGCGATCCGAGCGCTTCTCCATTTAGTTGGTAAAGAAAAACCCCAAGTGATTTTTATCATGGAAA
CCAAAAGTGACTATGGGAAGTGTGAGAGGATCAAGCTTGATTTGCAGTACGAGTCTATGTTTAGTGTGCCGAGTATTGGTAGCAGTGGAGGGCTTATGATCCTTTGGAAT
TCGGAAACAGAGGTTTCTATCAATTCGTATTCTGAAGGCCACATCGATGCTATGATAATAGACCAACCGGTTTCCTGGAGTTCACTGGCTTTTATGGTAACCCTGAAACA
GACAAAAGACATTTCTCGTGGGAATTATTGGAAAGACTCAAAGACAGGTTTGATGGCCCTTGGTTGGTGGGGGGAGACTTCAATGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTGGCGAATGCTACTGACAGTGACACAAACAAAAGATCTAAAACCTACTGCTTCGAAGTTTCGGAGGGATATCGGCGGAGGCTGTGGAACAGCCCCGCCGGACGC
CATGAAAACCTTATGTTGGAACGCTCGAGGTTTGGGGAATCCTCGAGCGATCCGAGCGCTTCTCCATTTAGTTGGTAAAGAAAAACCCCAAGTGATTTTTATCATGGAAA
CCAAAAGTGACTATGGGAAGTGTGAGAGGATCAAGCTTGATTTGCAGTACGAGTCTATGTTTAGTGTGCCGAGTATTGGTAGCAGTGGAGGGCTTATGATCCTTTGGAAT
TCGGAAACAGAGGTTTCTATCAATTCGTATTCTGAAGGCCACATCGATGCTATGATAATAGACCAACCGGTTTCCTGGAGTTCACTGGCTTTTATGGTAACCCTGAAACA
GACAAAAGACATTTCTCGTGGGAATTATTGGAAAGACTCAAAGACAGGTTTGATGGCCCTTGGTTGGTGGGGGGAGACTTCAATGAGGTGA
Protein sequenceShow/hide protein sequence
MGWRMLLTVTQTKDLKPTASKFRRDIGGGCGTAPPDAMKTLCWNARGLGNPRAIRALLHLVGKEKPQVIFIMETKSDYGKCERIKLDLQYESMFSVPSIGSSGGLMILWN
SETEVSINSYSEGHIDAMIIDQPVSWSSLAFMVTLKQTKDISRGNYWKDSKTGLMALGWWGETSMR