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Lag0015042 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015042
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr12:7024956..7025800
RNA-Seq ExpressionLag0015042
SyntenyLag0015042
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060627.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]2.7e-2154.29Show/hide
Query:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD
        T+FS+PPLNQL NQ++S+KLDRGN+LLWK LALPI++SYK EGHL+GE PCPP+FI          +  TA            GASS ST   TVNP++D
Subjt:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD

Query:  HGLPS
          L S
Subjt:  HGLPS

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]2.4e-1753.04Show/hide
Query:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA
        M +A  I  +A    TSF++P LNQ+ NQ+T+IKLDRGN+LLWK LALPIL+SYKL  HL GE PC P+ I     T  PN S     G  S E      
Subjt:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA

Query:  SSSSTPVATVNPQYD
        SSSST V TVNP+Y+
Subjt:  SSSSTPVATVNPQYD

TYK02246.1 uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]2.7e-2154.29Show/hide
Query:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD
        T+FS+PPLNQL NQ++S+KLDRGN+LLWK LALPI++SYK EGHL+GE PCPP+FI          +  TA            GASS ST   TVNP++D
Subjt:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD

Query:  HGLPS
          L S
Subjt:  HGLPS

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]1.4e-1751.69Show/hide
Query:  KAKMASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVV
        ++ M +A  I  +A    TSF++P LNQ+ NQ+T+IKLDRGN+LLWK LALPIL+SYKL  HL GE PC P+ I     T  PN S     G  S E   
Subjt:  KAKMASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVV

Query:  SGASSSSTPVATVNPQYD
           SSSST V TVNP+Y+
Subjt:  SGASSSSTPVATVNPQYD

XP_016901223.1 PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]3.3e-1949.17Show/hide
Query:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA
        MA+A S+  S+    T+FS+PPLNQL NQ++S+KLDR N+LLWK LALPI++SYK EG+L+GE PCPP+FI          +  TA            GA
Subjt:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA

Query:  SSSSTPVATVNPQYDHGLPS
        SS S    TVNP++D  L S
Subjt:  SSSSTPVATVNPQYDHGLPS

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911166.7e-1851.69Show/hide
Query:  KAKMASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVV
        ++ M +A  I  +A    TSF++P LNQ+ NQ+T+IKLDRGN+LLWK LALPIL+SYKL  HL GE PC P+ I     T  PN S     G  S E   
Subjt:  KAKMASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVV

Query:  SGASSSSTPVATVNPQYD
           SSSST V TVNP+Y+
Subjt:  SGASSSSTPVATVNPQYD

A0A1S4DZ26 uncharacterized protein LOC1079912021.6e-1949.17Show/hide
Query:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA
        MA+A S+  S+    T+FS+PPLNQL NQ++S+KLDR N+LLWK LALPI++SYK EG+L+GE PCPP+FI          +  TA            GA
Subjt:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA

Query:  SSSSTPVATVNPQYDHGLPS
        SS S    TVNP++D  L S
Subjt:  SSSSTPVATVNPQYDHGLPS

A0A5A7V1E0 Reverse transcriptase, RNA-dependent DNA polymerase1.3e-2154.29Show/hide
Query:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD
        T+FS+PPLNQL NQ++S+KLDRGN+LLWK LALPI++SYK EGHL+GE PCPP+FI          +  TA            GASS ST   TVNP++D
Subjt:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD

Query:  HGLPS
          L S
Subjt:  HGLPS

A0A5A7VPY0 Uncharacterized protein1.1e-1753.04Show/hide
Query:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA
        M +A  I  +A    TSF++P LNQ+ NQ+T+IKLDRGN+LLWK LALPIL+SYKL  HL GE PC P+ I     T  PN S     G  S E      
Subjt:  MASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGA

Query:  SSSSTPVATVNPQYD
        SSSST V TVNP+Y+
Subjt:  SSSSTPVATVNPQYD

A0A5D3BVJ1 Uncharacterized protein1.3e-2154.29Show/hide
Query:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD
        T+FS+PPLNQL NQ++S+KLDRGN+LLWK LALPI++SYK EGHL+GE PCPP+FI          +  TA            GASS ST   TVNP++D
Subjt:  TSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQAAATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYD

Query:  HGLPS
          L S
Subjt:  HGLPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATTATGAGAGATTTCTCGGACTTATCGATCTGCTGCATAGCCGAAGCCACCGCTGCCGCTGAAGATGAAGAAGAAGAAGGCAAAGCTAAAATGGCCAGC
GCCAATTCGATCGGAGCTTCTGCTGTGTCCTTCGGAACAAGCTTCAGTAGCCCTCCATTGAACCAATTGCCGAATCAAATCACTTCCATCAAGTTAGACAGAGGT
AATTTCCTACTCTGGAAAAACCTTGCGCTCCCAATTCTTCGAAGCTATAAATTGGAAGGCCACCTCTCTGGTGAGAAGCCTTGTCCACCGCAGTTTATTCAAGCA
GCTGCAACAACTGAAAACCCAAATGTAAGCTCAACCGCTAGGGAAGGAGCTTCGAGTTCTGAGGCAGTCGTGAGTGGAGCATCCTCATCCTCAACTCCAGTGGCG
ACTGTCAATCCACAGTATGATCATGGGTTGCCATCGATCAATTGTTACTCGGATGGCTCTATAATTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCATTATGAGAGATTTCTCGGACTTATCGATCTGCTGCATAGCCGAAGCCACCGCTGCCGCTGAAGATGAAGAAGAAGAAGGCAAAGCTAAAATGGCCAGC
GCCAATTCGATCGGAGCTTCTGCTGTGTCCTTCGGAACAAGCTTCAGTAGCCCTCCATTGAACCAATTGCCGAATCAAATCACTTCCATCAAGTTAGACAGAGGT
AATTTCCTACTCTGGAAAAACCTTGCGCTCCCAATTCTTCGAAGCTATAAATTGGAAGGCCACCTCTCTGGTGAGAAGCCTTGTCCACCGCAGTTTATTCAAGCA
GCTGCAACAACTGAAAACCCAAATGTAAGCTCAACCGCTAGGGAAGGAGCTTCGAGTTCTGAGGCAGTCGTGAGTGGAGCATCCTCATCCTCAACTCCAGTGGCG
ACTGTCAATCCACAGTATGATCATGGGTTGCCATCGATCAATTGTTACTCGGATGGCTCTATAATTCAATGA
Protein sequenceShow/hide protein sequence
MTIMRDFSDLSICCIAEATAAAEDEEEEGKAKMASANSIGASAVSFGTSFSSPPLNQLPNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGEKPCPPQFIQA
AATTENPNVSSTAREGASSSEAVVSGASSSSTPVATVNPQYDHGLPSINCYSDGSIIQ