CuGenDBv2

Gene ID	Lag0015065
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Genome location	chr12:7213881..7214408
RNA-Seq Expression	Lag0015065
Synteny	Lag0015065
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589210.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-68

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MAS TL+TPCTSKSQPL++P KPKST S      AAA H+ RRR+ LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
         AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022930794.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

5.8e-70

85.14

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MAS TL+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
         AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

2.4e-68

85.14

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T     H  RRR+FLSLTASVLA  WVLF PAPA AS+ DEEYVKDT EVI KVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022988975.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]

5.8e-70

85.14

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MAS  L+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
         AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_023529218.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

3.4e-70

85.14

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MAS TL+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
         AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SR30 Photosystem II repair protein PSB27-H1

1.0e-64

81.71

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MASPTL+TPCTSKSQ   +PLKPKST SAA +T        RRR FLSL+ASVLA  +VLF  +PA A++DD EYVKDTNEVI KVRTTI MD+NDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAVA+LRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1ESI1 photosystem II repair protein PSB27-H1, chloroplastic-like

2.8e-70

85.14

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MAS TL+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
         AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

1.2e-68

85.14

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T     H  RRR+FLSLTASVLA  WVLF PAPA AS+ DEEYVKDT EVI KVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

1.2e-68

85.14

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T     H  RRR+FLSLTASVLA  WVLF PAPA AS+ DEEYVKDT EVI KVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1JL33 photosystem II repair protein PSB27-H1, chloroplastic-like

2.8e-70

85.14

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Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA
        MAS  L+TPCTSKSQPL++P KPKST S      AAA H+PRRR+ LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVA

Query:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
         AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  AAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

7.1e-47

64.33

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Query:  SKSQPLVVPLKPKSTTSAAASTAAAAAHNPR-----RRQFLSL--TASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVA
        S +  L+ P  P    +  AS+ +     PR     RR FLSL  T+++L        PAP  A A+DEEY+KDT+ VISKVR+T++M K DPNVA AVA
Subjt:  SKSQPLVVPLKPKSTTSAAASTAAAAAHNPR-----RRQFLSL--TASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVA

Query:  ELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.3e-05

25.41

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Query:  VLAAPWVLFRPAPAQASADD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFRPAPAQASADD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

5.1e-48

64.33

Show/hide

Query:  SKSQPLVVPLKPKSTTSAAASTAAAAAHNPR-----RRQFLSL--TASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVA
        S +  L+ P  P    +  AS+ +     PR     RR FLSL  T+++L        PAP  A A+DEEY+KDT+ VISKVR+T++M K DPNVA AVA
Subjt:  SKSQPLVVPLKPKSTTSAAASTAAAAAHNPR-----RRQFLSL--TASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVA

Query:  ELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

1.7e-06

25.41

Show/hide

Query:  VLAAPWVLFRPAPAQASADD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFRPAPAQASADD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

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ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCC
GCCGCCGCCCACAATCCCCGCCGCCGCCAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGTCCGGCGCCGGCGCAGGCCTCGGCG
GACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAG
CTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCG
GGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGCTAAGAGGGAGA
TGA

mRNA sequence

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Protein sequence

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MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAAAAHNPRRRQFLSLTASVLAAPWVLFRPAPAQASADDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAE
LRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Lag0015065 (gene) of Sponge gourd (AG-4) v1 genome