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Lag0015167 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015167
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase)
Genome locationchr12:8286985..8289142
RNA-Seq ExpressionLag0015167
SyntenyLag0015167
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055611.1 unnamed protein product [Microthlaspi erraticum]1.4e-0627.27Show/hide
Query:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWE-TSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLI------
        +W IW  RN +    +E     ++    E  +EWE    +K+   + +  + S++ W+ P    WK N D +W ++  K G+GW++ D NG++I      
Subjt:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWE-TSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLI------

Query:  ----KSDLRAEELDLRWSKVESSTCILMKKRLILWSLSVVGSSESGDDRILNLG
            +S L  E   LRW+ + S T +  +K       S   +  +G DR  +LG
Subjt:  ----KSDLRAEELDLRWSKVESSTCILMKKRLILWSLSVVGSSESGDDRILNLG

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.7e-0733.57Show/hide
Query:  MWNIWNFRNRIQSFNKETTEGLLSRGIEES-IKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSD-LR
        +W+IW +RN+I     E       R   ES I E+ T+   + N+E  K+      W  P  H WKLNVDA W + L  GG+GW+V D  G  I ++ L+
Subjt:  MWNIWNFRNRIQSFNKETTEGLLSRGIEES-IKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSD-LR

Query:  AEELDLRWS---KVE-SSTC-----ILMKKRLILWSLSVV
        A    L      K+E  S C     I+ K  ++L  +S++
Subjt:  AEELDLRWS---KVE-SSTC-----ILMKKRLILWSLSVV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.0e-0528.71Show/hide
Query:  WNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKL-KSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSDLRAE
        W IWN RN +    + ++   + + + + +   E+SY    +L  L K+  ++  W+ P  H W LN DA+W +   +GGIGW++   +G ++ +  R  
Subjt:  WNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKL-KSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSDLRAE

Query:  E
        E
Subjt:  E

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.5e-0533.64Show/hide
Query:  WNIWNFRNR--IQSFNKETTEGLL--------SRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGS
        W IW  RN+   +  + ET +  L        S G + ++K    S  K  +L +     +   W+ P ++ WKLN DAAW  D   GGIGW++ D  G 
Subjt:  WNIWNFRNR--IQSFNKETTEGLL--------SRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGS

Query:  LIKSDLR
        +IK+D R
Subjt:  LIKSDLR

XP_030936078.1 uncharacterized protein LOC115961199 [Quercus lobata]3.9e-0630.53Show/hide
Query:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKS
        MW IW+ RN+++  + +     + +   +++  ++ S          +    +T W  P  +C+KLN D A+F ++GK G+G VVHD  GS+I S
Subjt:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKS

TrEMBL top hitse value%identityAlignment
A0A392Q073 Cytochrome P4503.0e-0431.18Show/hide
Query:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLI
        +W +W+ RN + + +KE    L  +       EW            ++ Q  QT WQKP    +K NVDA + +DL K  +GW +HD  G  +
Subjt:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLI

A0A6D2KM87 RNase H domain-containing protein6.6e-0727.27Show/hide
Query:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWE-TSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLI------
        +W IW  RN +    +E     ++    E  +EWE    +K+   + +  + S++ W+ P    WK N D +W ++  K G+GW++ D NG++I      
Subjt:  MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWE-TSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLI------

Query:  ----KSDLRAEELDLRWSKVESSTCILMKKRLILWSLSVVGSSESGDDRILNLG
            +S L  E   LRW+ + S T +  +K       S   +  +G DR  +LG
Subjt:  ----KSDLRAEELDLRWSKVESSTCILMKKRLILWSLSVVGSSESGDDRILNLG

A0A6J1D4B6 uncharacterized protein LOC1110171811.3e-0733.57Show/hide
Query:  MWNIWNFRNRIQSFNKETTEGLLSRGIEES-IKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSD-LR
        +W+IW +RN+I     E       R   ES I E+ T+   + N+E  K+      W  P  H WKLNVDA W + L  GG+GW+V D  G  I ++ L+
Subjt:  MWNIWNFRNRIQSFNKETTEGLLSRGIEES-IKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSD-LR

Query:  AEELDLRWS---KVE-SSTC-----ILMKKRLILWSLSVV
        A    L      K+E  S C     I+ K  ++L  +S++
Subjt:  AEELDLRWS---KVE-SSTC-----ILMKKRLILWSLSVV

A0A6J1DNV9 uncharacterized protein LOC1110224039.5e-0628.71Show/hide
Query:  WNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKL-KSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSDLRAE
        W IWN RN +    + ++   + + + + +   E+SY    +L  L K+  ++  W+ P  H W LN DA+W +   +GGIGW++   +G ++ +  R  
Subjt:  WNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKL-KSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSDLRAE

Query:  E
        E
Subjt:  E

A0A6J1DSV1 uncharacterized protein LOC1110236087.3e-0633.64Show/hide
Query:  WNIWNFRNR--IQSFNKETTEGLL--------SRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGS
        W IW  RN+   +  + ET +  L        S G + ++K    S  K  +L +     +   W+ P ++ WKLN DAAW  D   GGIGW++ D  G 
Subjt:  WNIWNFRNR--IQSFNKETTEGLL--------SRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGS

Query:  LIKSDLR
        +IK+D R
Subjt:  LIKSDLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAATATATGGAATTTTAGGAATAGAATCCAATCTTTCAACAAGGAGACAACAGAAGGCCTTCTCAGCAGAGGAATCGAGGAAAGCATAAAGGAGTGGGAAACCTC
TTACCTTAAGAGCGATAATCTGGAGAAGTTGAAGAGCCAGACGAGTCAAACATTTTGGCAAAAACCAAGAACCCACTGTTGGAAATTAAATGTGGATGCTGCCTGGTTCG
AAGATTTAGGCAAAGGCGGAATTGGTTGGGTGGTGCATGACTTGAATGGATCCTTGATCAAGTCTGATCTGAGGGCTGAAGAGCTTGATCTCAGATGGAGCAAGGTTGAA
TCTTCAACTTGTATCTTGATGAAGAAACGGTTGATTCTTTGGAGTCTTTCAGTCGTTGGATCTTCTGAGTCTGGAGATGACCGAATTCTGAATCTTGGATCTTCTGAATT
CTTTGGACTCTCTGACTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAATATATGGAATTTTAGGAATAGAATCCAATCTTTCAACAAGGAGACAACAGAAGGCCTTCTCAGCAGAGGAATCGAGGAAAGCATAAAGGAGTGGGAAACCTC
TTACCTTAAGAGCGATAATCTGGAGAAGTTGAAGAGCCAGACGAGTCAAACATTTTGGCAAAAACCAAGAACCCACTGTTGGAAATTAAATGTGGATGCTGCCTGGTTCG
AAGATTTAGGCAAAGGCGGAATTGGTTGGGTGGTGCATGACTTGAATGGATCCTTGATCAAGTCTGATCTGAGGGCTGAAGAGCTTGATCTCAGATGGAGCAAGGTTGAA
TCTTCAACTTGTATCTTGATGAAGAAACGGTTGATTCTTTGGAGTCTTTCAGTCGTTGGATCTTCTGAGTCTGGAGATGACCGAATTCTGAATCTTGGATCTTCTGAATT
CTTTGGACTCTCTGACTTCTGA
Protein sequenceShow/hide protein sequence
MWNIWNFRNRIQSFNKETTEGLLSRGIEESIKEWETSYLKSDNLEKLKSQTSQTFWQKPRTHCWKLNVDAAWFEDLGKGGIGWVVHDLNGSLIKSDLRAEELDLRWSKVE
SSTCILMKKRLILWSLSVVGSSESGDDRILNLGSSEFFGLSDF