; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015238 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015238
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:9003476..9004377
RNA-Seq ExpressionLag0015238
SyntenyLag0015238
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKA56961.1 Putative ribonuclease H protein [Apostasia shenzhenica]4.3e-4339.27Show/hide
Query:  YKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESV
        YKIIAKALA R+K  L  +IS  Q+ FVP+RL+S+N+I+ +EC+H++N R+RG     A+KLDMSKAY RVEW F+ +MM  + F S +   I+  I +V
Subjt:  YKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESV

Query:  SYRVLLNR------VPRK---------------------KFILEGALNKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASGQC
        SY +  N       +P++                       I     N++ H  R S  S     LF    SLLF RA  ++ + I+KI+E+YE+ASGQ 
Subjt:  SYRVLLNR------VPRK---------------------KFILEGALNKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASGQC

Query:  INLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        IN +KS    S+N   EK ++L  LL +    N+  YLGLP   GR K + F  +K+R+   ++ WK++L S GG
Subjt:  INLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

XP_021714646.1 uncharacterized protein LOC110682599 [Chenopodium quinoa]3.9e-4437.59Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        ++YK+ +K++A R+K  L+ ++++ Q+ FVP+RL+++N ++  E  H +  R +G+ GS++MKLDMSKAY RVEW F+R ++ KLGF+  W + IM F+ 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKFILEGAL---------------------------NKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG
        +VSY  ++N +P    I    L                            K  HS R S +      LF    SLLF+RA  ++C  I  +L  YE  SG
Subjt:  SVSYRVLLNRVPRKKFILEGAL---------------------------NKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFS
        Q INLEKS    SK +S    +    +LG  + +N   YLGLP++ GR K  VF  VK+R+W  +Q WK+KL S
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFS

XP_021749725.1 uncharacterized protein LOC110715453 [Chenopodium quinoa]2.5e-4337.91Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        ++YK+ +K++A R+K  L G++++ Q+ FVP+RL++NN ++  E  H +  R +G+ GS+A KLDMSKAY RVEW F+R ++ KLGF+  W + IM F+ 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKFILEGAL---------------------------NKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG
        +VSY   +N VP    I    L                            K  H  R S +      LF     LLF+RA  ++C  I  IL  YE  SG
Subjt:  SVSYRVLLNRVPRKKFILEGAL---------------------------NKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        Q INLEKS    SK +     + L  +LG+ + ++   YLGLP++ GR K  VF  VK+R+W  +Q WK+KL S  G
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]2.1e-5044.16Show/hide
Query:  IIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSY
        +IAKALA R+K  ++ VIS TQ+ FVP R +++N I+ FECI+A+ N+R GK G +AMKLDMSKAY RVEW ++R +M K+GF++ W + IM  +ESV +
Subjt:  IIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSY

Query:  RVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEA-SGQCI
         VL+N VP  +F                       L   +N E      +   + +     + LF     LLF +A   +CR+IK ILE YE+A SGQCI
Subjt:  RVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEA-SGQCI

Query:  NLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        NL+KS F+ SKN  ++ V  +   L ++  +++G YLGLPSQ GR K +VF  +K+RVW  LQ WK KLFS GG
Subjt:  NLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

XP_023925698.1 uncharacterized protein LOC112037116 [Quercus suber]2.3e-4442.24Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        +IYKIIA+ LA R+K+ L  +IS TQ+ FVP RL+++NV++ +E +H  + RR+GK G+LAMKLD+SKAY RVEW F++ +M KLGF S W +++M  + 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKF-ILEGALNKETHSP------RTSFSSVL-KATL--------FCRQ-----------HSLLFSRAEEKDCRAIKKILEVYEEASG
        S S+ VL+N  P        G    +  SP         F+S+L KA L         CR+            SLLF +A EK+ + + +IL++Y EASG
Subjt:  SVSYRVLLNRVPRKKF-ILEGALNKETHSP------RTSFSSVL-KATL--------FCRQ-----------HSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        QCIN++KSS   + N + +    +  LLG+S  D    YLGLP+  GRKK   F  +K+RVW  LQ WK + FS  G
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

TrEMBL top hitse value%identityAlignment
A0A2N9ESR2 Uncharacterized protein2.2e-4540.07Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        +IYK+I+K LA R+KK L  VIS TQ+ FVP RL+++N+++ FE +H ++N+R GK GS+A+KLDMSKAY RVEW F++++M ++GF   WT+ IM  I 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG
        +VSY +L+N  P                           L G L K  +       S+ +       LF    SLLF RA  ++C+ I+ IL +YE+ASG
Subjt:  SVSYRVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        Q +N EK++   S+N  +    +L D+LG+        YLGLPS  G++K   F ++KERVW+ ++ WK+KL S  G
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

A0A2N9H0J9 Uncharacterized protein1.9e-4439.35Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        +IYK+I+K LA R+K+ L  VI++TQ+ FVP RL+++NV++ FE +H ++N+R+G+ GS+A+KLDMSKAY RVEW F+R++M K+GF S W + +M+ I 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKFI----------------------LEGALNK-----ETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG
        +VSY +L+N  PR                          L G LNK     E H             LF    SLLF RA + +C  I+ +L +YE+ASG
Subjt:  SVSYRVLLNRVPRKKFI----------------------LEGALNK-----ETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        Q +N  K++   S N S+     + ++LG+        YLGLPS  G++K   F ++K+RVW+ ++ WK+KL S  G
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

A0A2N9I9F4 Reverse transcriptase domain-containing protein2.2e-4540.07Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        +IYK+I+K LA R+KK L  VIS TQ+ FVP RL+++N+++ FE +H ++N+R GK GS+A+KLDMSKAY RVEW F++++M ++GF   WT+ IM  I 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG
        +VSY +L+N  P                           L G L K  +       S+ +       LF    SLLF RA  ++C+ I+ IL +YE+ASG
Subjt:  SVSYRVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        Q +N EK++   S+N  +    +L D+LG+        YLGLPS  G++K   F ++KERVW+ ++ WK+KL S  G
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

A0A2N9IP69 Reverse transcriptase domain-containing protein2.9e-4539.71Show/hide
Query:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE
        +IY++I+K LA R KK L  +IS+TQ+ FVP RL+++N+++ FE +H +NN+R GK GS+A+KLDMSKAY RVEW F++++M K+GF S W + IM+ I 
Subjt:  MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIE

Query:  SVSYRVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG
        +VSY +L+N  P    I                      L G LNK          S+ +       LF    SLLF RA + +C  I+++L+VYE  SG
Subjt:  SVSYRVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASG

Query:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        Q +N  K++   S+N  +     + D+LG+        YL LPS  G+KK   F ++KERVW+ ++ WK+KL S  G
Subjt:  QCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

A0A6J1DUG8 uncharacterized protein LOC1110241351.0e-5044.16Show/hide
Query:  IIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSY
        +IAKALA R+K  ++ VIS TQ+ FVP R +++N I+ FECI+A+ N+R GK G +AMKLDMSKAY RVEW ++R +M K+GF++ W + IM  +ESV +
Subjt:  IIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSY

Query:  RVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEA-SGQCI
         VL+N VP  +F                       L   +N E      +   + +     + LF     LLF +A   +CR+IK ILE YE+A SGQCI
Subjt:  RVLLNRVPRKKFI----------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEA-SGQCI

Query:  NLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG
        NL+KS F+ SKN  ++ V  +   L ++  +++G YLGLPSQ GR K +VF  +K+RVW  LQ WK KLFS GG
Subjt:  NLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases3.9e-1030.59Show/hide
Query:  RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMK
        R+K  +  +I   QA+F+P R+ ++N++   E +H++  R++G +G + +KLD+ KAY R+ W ++ + +   GF   W  +I +
Subjt:  RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTACAAAATTATCGCTAAGGCCTTAGCTAGGATGAAAAAGACTTTGGAAGGGGTCATTTCTCAAACTCAAGCAACTTTTGTCCCTAGAAGACTTTTATCTAACAA
CGTGATCCTTGATTTTGAATGTATCCACGCTCTAAACAATAGAAGAAGAGGTAAGGAAGGATCCTTGGCAATGAAGCTGGACATGAGTAAAGCCTACTACAGAGTTGAAT
GGATCTTCATCAGGGAGATGATGAGGAAACTAGGCTTTAGTTCGTGTTGGACCAACAAAATCATGAAATTCATTGAATCAGTATCCTACAGAGTTCTTTTGAACAGAGTC
CCCAGGAAGAAATTCATCCTAGAAGGGGCCTTAAACAAGGAGACCCACTCTCCCCGTACCTCTTTCTCATCTGTGCTGAAGGCAACTCTTTTTTGCAGACAACACAGTCT
CCTTTTCAGTAGAGCGGAGGAAAAAGATTGTAGAGCTATAAAGAAGATCTTGGAGGTGTACGAGGAAGCTTCTGGGCAATGCATCAACCTTGAAAAGTCCTCTTTCATGA
CAAGTAAAAACATCTCAAAGGAAAAAGTCGTGAAGCTAGGGGATCTCCTGGGAATTTCCTTAGCAGATAATATGGGCCATTATTTGGGTTTGCCTTCCCAAAATGGGAGG
AAAAAGGACGAGGTCTTCAGGAAAGTGAAAGAGAGAGTGTGGAATACCCTTCAGAAGTGGAAAAAGAAGCTCTTCTCAACCGGGGGGGGGGGAGGAAGTGCTTATCAAAG
TTATTGCCCAAGCAATCCCGACCTACACGATGAACTGCTTCAGACTCCCAGATTATCTCTGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTACAAAATTATCGCTAAGGCCTTAGCTAGGATGAAAAAGACTTTGGAAGGGGTCATTTCTCAAACTCAAGCAACTTTTGTCCCTAGAAGACTTTTATCTAACAA
CGTGATCCTTGATTTTGAATGTATCCACGCTCTAAACAATAGAAGAAGAGGTAAGGAAGGATCCTTGGCAATGAAGCTGGACATGAGTAAAGCCTACTACAGAGTTGAAT
GGATCTTCATCAGGGAGATGATGAGGAAACTAGGCTTTAGTTCGTGTTGGACCAACAAAATCATGAAATTCATTGAATCAGTATCCTACAGAGTTCTTTTGAACAGAGTC
CCCAGGAAGAAATTCATCCTAGAAGGGGCCTTAAACAAGGAGACCCACTCTCCCCGTACCTCTTTCTCATCTGTGCTGAAGGCAACTCTTTTTTGCAGACAACACAGTCT
CCTTTTCAGTAGAGCGGAGGAAAAAGATTGTAGAGCTATAAAGAAGATCTTGGAGGTGTACGAGGAAGCTTCTGGGCAATGCATCAACCTTGAAAAGTCCTCTTTCATGA
CAAGTAAAAACATCTCAAAGGAAAAAGTCGTGAAGCTAGGGGATCTCCTGGGAATTTCCTTAGCAGATAATATGGGCCATTATTTGGGTTTGCCTTCCCAAAATGGGAGG
AAAAAGGACGAGGTCTTCAGGAAAGTGAAAGAGAGAGTGTGGAATACCCTTCAGAAGTGGAAAAAGAAGCTCTTCTCAACCGGGGGGGGGGGAGGAAGTGCTTATCAAAG
TTATTGCCCAAGCAATCCCGACCTACACGATGAACTGCTTCAGACTCCCAGATTATCTCTGCAATGA
Protein sequenceShow/hide protein sequence
MIYKIIAKALARMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRV
PRKKFILEGALNKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGR
KKDEVFRKVKERVWNTLQKWKKKLFSTGGGGGSAYQSYCPSNPDLHDELLQTPRLSLQ