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Lag0015239 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015239
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDDB1- and CUL4-associated factor 13
Genome locationchr12:9010414..9011317
RNA-Seq ExpressionLag0015239
SyntenyLag0015239
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.0e-0739.76Show/hide
Query:  HFPSRRKNLSQ--ARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTV
        + P  R+NL+    RWS P    WKLN DASW  +   GGIGWILCD  G  +     +I        LE+  II+GL+ + +
Subjt:  HFPSRRKNLSQ--ARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTV

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]8.6e-0734.95Show/hide
Query:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTVAVFR---VSKSDCAALTFA
        H   R ++ + A+W PP+  +WKLN +A+W    N GGIGWIL D  G  I    + I +  +   LE+ AI +GLR +     R   +      A+   
Subjt:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTVAVFR---VSKSDCAALTFA

Query:  HRQ
        HRQ
Subjt:  HRQ

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]3.9e-0732.12Show/hide
Query:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC
        ++ Y+    G++   +   K+  P RR  + ++ARW PP+  +WKLN DA+W    N  GIGWIL D  G  I    + I +  +   LE+ AI +GLR 
Subjt:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC

Query:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG
        +     R    +  +L   H  H    H +  L  FG
Subjt:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]3.9e-0732.12Show/hide
Query:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC
        ++ Y+    G++   +   K+  P RR  + ++ARW PP+  +WKLN DA+W    N  GIGWIL D  G  I    + I +  +   LE+ AI +GLR 
Subjt:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC

Query:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG
        +     R    +  +L   H  H    H +  L  FG
Subjt:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.3e-0741.77Show/hide
Query:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCV
        H   R  + + ARW PP+  +WKLN DA+W    N GGIGWIL D  G  I    + I +  +   LE+ AI +GLR +
Subjt:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.2e-0734.95Show/hide
Query:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTVAVFR---VSKSDCAALTFA
        H   R ++ + A+W PP+  +WKLN +A+W    N GGIGWIL D  G  I    + I +  +   LE+ AI +GLR +     R   +      A+   
Subjt:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTVAVFR---VSKSDCAALTFA

Query:  HRQ
        HRQ
Subjt:  HRQ

A0A6J1CQG0 uncharacterized protein LOC1110132161.4e-0739.76Show/hide
Query:  HFPSRRKNLSQ--ARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTV
        + P  R+NL+    RWS P    WKLN DASW  +   GGIGWILCD  G  +     +I        LE+  II+GL+ + +
Subjt:  HFPSRRKNLSQ--ARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTV

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.9e-0732.12Show/hide
Query:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC
        ++ Y+    G++   +   K+  P RR  + ++ARW PP+  +WKLN DA+W    N  GIGWIL D  G  I    + I +  +   LE+ AI +GLR 
Subjt:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC

Query:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG
        +     R    +  +L   H  H    H +  L  FG
Subjt:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.9e-0732.12Show/hide
Query:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC
        ++ Y+    G++   +   K+  P RR  + ++ARW PP+  +WKLN DA+W    N  GIGWIL D  G  I    + I +  +   LE+ AI +GLR 
Subjt:  MEAYMQTFKGKEKTNRFFPKNHFPSRR-KNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRC

Query:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG
        +     R    +  +L   H  H    H +  L  FG
Subjt:  VTVAVFRVSKSDCAALTFAHRQHALDEHDRDTLHTFG

A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-0741.77Show/hide
Query:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCV
        H   R  + + ARW PP+  +WKLN DA+W    N GGIGWIL D  G  I    + I +  +   LE+ AI +GLR +
Subjt:  HFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTTACATGCAAACATTCAAAGGCAAAGAGAAGACTAACCGATTTTTCCCGAAGAATCATTTTCCCTCAAGGAGGAAGAACCTGAGTCAAGCGAGATGGTCTCC
CCCTTCGGACGGCGCTTGGAAGCTGAACGTCGATGCTTCCTGGTTAGGCAAGCTGAACAGGGGAGGAATTGGTTGGATTTTGTGTGACTCAGTAGGGTCTTCAATCTGTC
ACAGATACAAGAGAATCAACTCAAGTTGGTCAACCAAGATGTTAGAGATGAAAGCTATTATCAAAGGGTTGCGTTGTGTCACAGTCGCGGTCTTTAGGGTCTCGAAAAGC
GACTGTGCGGCACTTACTTTCGCTCACAGGCAACACGCCTTGGACGAGCATGACCGTGACACGTTGCATACCTTTGGTAGAAGCAAATCGTTCGAATTTGTCAGTCCTGC
CTATTCAGGTGGAATCGGATGTTGCGGACGTTGTGAGGCTCCTAAACGACGAAGACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTTACATGCAAACATTCAAAGGCAAAGAGAAGACTAACCGATTTTTCCCGAAGAATCATTTTCCCTCAAGGAGGAAGAACCTGAGTCAAGCGAGATGGTCTCC
CCCTTCGGACGGCGCTTGGAAGCTGAACGTCGATGCTTCCTGGTTAGGCAAGCTGAACAGGGGAGGAATTGGTTGGATTTTGTGTGACTCAGTAGGGTCTTCAATCTGTC
ACAGATACAAGAGAATCAACTCAAGTTGGTCAACCAAGATGTTAGAGATGAAAGCTATTATCAAAGGGTTGCGTTGTGTCACAGTCGCGGTCTTTAGGGTCTCGAAAAGC
GACTGTGCGGCACTTACTTTCGCTCACAGGCAACACGCCTTGGACGAGCATGACCGTGACACGTTGCATACCTTTGGTAGAAGCAAATCGTTCGAATTTGTCAGTCCTGC
CTATTCAGGTGGAATCGGATGTTGCGGACGTTGTGAGGCTCCTAAACGACGAAGACCATGA
Protein sequenceShow/hide protein sequence
MEAYMQTFKGKEKTNRFFPKNHFPSRRKNLSQARWSPPSDGAWKLNVDASWLGKLNRGGIGWILCDSVGSSICHRYKRINSSWSTKMLEMKAIIKGLRCVTVAVFRVSKS
DCAALTFAHRQHALDEHDRDTLHTFGRSKSFEFVSPAYSGGIGCCGRCEAPKRRRP