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Lag0015245 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015245
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationchr12:9050877..9051568
RNA-Seq ExpressionLag0015245
SyntenyLag0015245
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056510.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]3.7e-1446.02Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIG+QPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

KAE8648432.1 hypothetical protein Csa_023661 [Cucumis sativus]2.8e-1446.9Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIGIQPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

TYK12080.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]3.7e-1446.02Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIG+QPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

XP_022147962.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]3.7e-1446.9Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQG---------------------------------------------------YFKVVGHQNFASGSG
        FE+FL GGIGIQPHVRLTS+ LELD+EEQL+YQG                                                   YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQG---------------------------------------------------YFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GD R LELVCWNN
Subjt:  GDMRMLELVCWNN

XP_031741647.1 protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus]2.8e-1446.9Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIGIQPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

TrEMBL top hitse value%identityAlignment
A0A0A0KRP2 PORR domain-containing protein1.4e-1446.9Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIGIQPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

A0A1S4DWI5 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X11.5e-1345.13Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIG+QPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVG QNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

A0A5A7UN72 Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X11.8e-1446.02Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIG+QPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

A0A5D3CKY8 Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X11.8e-1446.02Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG
        FE+FL GGIG+QPHV+LTS+ LELD+EEQLTYQ                                                    YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQ---------------------------------------------------GYFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GDMR+LELVCWNN
Subjt:  GDMRMLELVCWNN

A0A6J1D3S2 protein ROOT PRIMORDIUM DEFECTIVE 11.8e-1446.9Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQG---------------------------------------------------YFKVVGHQNFASGSG
        FE+FL GGIGIQPHVRLTS+ LELD+EEQL+YQG                                                   YFKVVGHQNFASGS 
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQG---------------------------------------------------YFKVVGHQNFASGSG

Query:  GDMRMLELVCWNN
        GD R LELVCWNN
Subjt:  GDMRMLELVCWNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein4.4e-0559.38Show/hide
Query:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTY
        F++FL GGIGI PH+ LT E L  D++EQL Y
Subjt:  FEQFLSGGIGIQPHVRLTSEGLELDSEEQLTY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTAAGTAGAGTAATACAATGTTTTTGTTCTTCTGCTCTTGCTCAGGGCCTCTTCATCAGTCTCAACAACATCATGTTTTCTCGATACACCTTCGAACAATTCCT
CTCTGGAGGGATTGGCATTCAACCTCATGTCCGGTTAACATCTGAAGGCCTTGAGCTTGATTCTGAAGAGCAGTTGACATATCAAGGTTACTTCAAAGTTGTAGGACATC
AAAATTTTGCATCTGGATCAGGAGGAGATATGCGAATGTTGGAATTGGTATGTTGGAACAATGGAATTGGCGACTTCAGTTTTAGAGAAGAAGGCTGCGAAAGGAAAACC
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTAAGTAGAGTAATACAATGTTTTTGTTCTTCTGCTCTTGCTCAGGGCCTCTTCATCAGTCTCAACAACATCATGTTTTCTCGATACACCTTCGAACAATTCCT
CTCTGGAGGGATTGGCATTCAACCTCATGTCCGGTTAACATCTGAAGGCCTTGAGCTTGATTCTGAAGAGCAGTTGACATATCAAGGTTACTTCAAAGTTGTAGGACATC
AAAATTTTGCATCTGGATCAGGAGGAGATATGCGAATGTTGGAATTGGTATGTTGGAACAATGGAATTGGCGACTTCAGTTTTAGAGAAGAAGGCTGCGAAAGGAAAACC
TGA
Protein sequenceShow/hide protein sequence
MKLSRVIQCFCSSALAQGLFISLNNIMFSRYTFEQFLSGGIGIQPHVRLTSEGLELDSEEQLTYQGYFKVVGHQNFASGSGGDMRMLELVCWNNGIGDFSFREEGCERKT