CuGenDBv2

Gene ID	Lag0015280
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Protein TIC 20
Genome location	chr12:9567489..9568505
RNA-Seq Expression	Lag0015280
Synteny	Lag0015280
Gene Ontology terms	GO:0009706 - chloroplast inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR005691 - Chloroplast protein import component Tic20

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4391284.1 hypothetical protein G4B88_016594 [Cannabis sativa]

2.7e-23

69.77

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKKNFLRYFVVDWF
        FN +QA+ LDVLLIFPDLLERS NPK+G GLDL+MS DS VFL LLVCL+YGSSS +LGQ+PRLPIVAEAA R++    +   DWF
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKKNFLRYFVVDWF

KAF8019651.1 hypothetical protein BT93_G0364 [Corymbia citriodora subsp. variegata]

9.3e-24

81.33

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKK
        FN +QA+ LDVLLIFPDLLERS NP++G GLDL+MS DS VFL LLVCLIYGSSS LLGQIPRLPIVAEAA RKK
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKK

PHT26460.1 Protein TIC 20-v, chloroplastic [Capsicum baccatum]

2.1e-23

78.38

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLDL+MSFDS VFL L VCL+YGSSS LLGQ+PRLPIVAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

PHU22722.1 Protein TIC 20-v, chloroplastic [Capsicum chinense]

3.5e-23

77.03

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLDL+MSFDS VFL + VCL+YGSSS LLGQ+PRLPIVAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

XP_021669730.1 protein TIC 20-v, chloroplastic [Hevea brasiliensis]

3.5e-23

79.73

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FNI+QA+ LDVLLIFPDLLERS NP++G GLDL+MS DS VFL LLVCLIYGSSS LLGQ+PRLPIVAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

TrEMBL top hits

e value

%identity

Alignment

A0A2G2V0B6 Protein TIC 20

1.0e-23

78.38

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLDL+MSFDS VFL L VCL+YGSSS LLGQ+PRLPIVAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

A0A2G3CVH2 Protein TIC 20

1.7e-23

77.03

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLDL+MSFDS VFL + VCL+YGSSS LLGQ+PRLPIVAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

A0A5B7B8G4 Protein TIC 20 (Fragment)

1.3e-23

79.73

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLDL+MS DS VFL LLVCLIYGSSS LLGQ+PRLPIVAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

A0A7J6H7Q0 Protein TIC 20

1.3e-23

69.77

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKKNFLRYFVVDWF
        FN +QA+ LDVLLIFPDLLERS NPK+G GLDL+MS DS VFL LLVCL+YGSSS +LGQ+PRLPIVAEAA R++    +   DWF
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKKNFLRYFVVDWF

A0A803QCT0 Uncharacterized protein

1.7e-23

61.9

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Query:  SNKVRLVQVLCRGCGCSGS---RESSSERSGFNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAE
        SN V  V V+  G G   +     + S    FN +QA+ LDVLLIFPDLLERS NPK+G GLDL+MS DS VFL LLVCL+YGSSS +LGQ+PRLPIVAE
Subjt:  SNKVRLVQVLCRGCGCSGS---RESSSERSGFNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAE

Query:  AANRK
        AA R+
Subjt:  AANRK

SwissProt top hits

e value

%identity

Alignment

O82251 Protein TIC 20-II, chloroplastic

2.3e-09

47.37

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKE--GFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QAV LDVLL  P LL R L+P +  GFG+  +M   + VF+   +C +YG  S LLG+ P +P VA+AA R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKE--GFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

Q9FM67 Protein TIC 20-v, chloroplastic

4.1e-22

71.62

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLD+VMS DS VFL LLV LIYG S+ L G  PRLP+VAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

Arabidopsis top hits

e value

%identity

Alignment

AT2G47840.1 Uncharacterised conserved protein ycf60

1.6e-10

47.37

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKE--GFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QAV LDVLL  P LL R L+P +  GFG+  +M   + VF+   +C +YG  S LLG+ P +P VA+AA R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKE--GFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

AT5G55710.1 FUNCTIONS IN: molecular_function unknown

2.9e-23

71.62

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Query:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK
        FN +QA+ LDVLLIFPDLLERS NP++GFGLD+VMS DS VFL LLV LIYG S+ L G  PRLP+VAEAA+R+
Subjt:  FNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRK

Sequences

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CDS sequence

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ATGGCGTCCAACCGCCGCCCCGCCTCAGTAACCCGCACACCCCGCGAGAAACGCCAACAGCGCCACCCTTTCTCGATGAGTTCTCACTCCCTTTTCGATCTCTCTGTCTC
TCTCTGTCTCTCGACATGCTTTCCATCTCCCACAGTGCTCTTCCTCCGATCATTGTCTGACGCACGCACCAGCTTGGGCGACAGCGACTCGTTGATAGTTCTACACACGA
ACAACATGTACGTGAGTTCATCCTCGCGTTTCCACCAGTCCAACAAGGTTAGACTCGTGCAAGTGTTGTGCAGAGGCTGTGGGTGCTCGGGCTCGCGCGAATCGTCTTCA
GAAAGAAGTGGGTTCAATATTGTGCAAGCGGTTTTTCTAGATGTGCTCCTAATTTTCCCTGATCTTTTGGAGAGGAGCCTTAATCCCAAAGAGGGATTTGGGTTGGATTT
GGTCATGAGTTTTGATAGTATTGTGTTTCTGATTCTTTTGGTTTGTTTGATTTATGGCTCTTCTTCTTTCTTATTGGGTCAGATCCCTAGATTGCCCATTGTTGCTGAAG
CTGCCAATAGGAAAAAAAACTTCCTTCGGTACTTTGTCGTAGATTGGTTCACTGTTTCATCTGGTGTTCCTAAACAGACTGATGAAGATGAAATGATTAAAGAAAAACAA
GTTAGATATAATCCTCAATGTCCATTTTTTCTGCTTTCTGTTGCTGAAAGCCTTGCCATTGTTTCTGAGGGAGGCAAGTGTTCTGATATGGGTTTGCAAGTTCTTGCCAC
TATTTCTGATTGA

mRNA sequence

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Protein sequence

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MASNRRPASVTRTPREKRQQRHPFSMSSHSLFDLSVSLCLSTCFPSPTVLFLRSLSDARTSLGDSDSLIVLHTNNMYVSSSSRFHQSNKVRLVQVLCRGCGCSGSRESSS
ERSGFNIVQAVFLDVLLIFPDLLERSLNPKEGFGLDLVMSFDSIVFLILLVCLIYGSSSFLLGQIPRLPIVAEAANRKKNFLRYFVVDWFTVSSGVPKQTDEDEMIKEKQ
VRYNPQCPFFLLSVAESLAIVSEGGKCSDMGLQVLATISD

Lag0015280 (gene) of Sponge gourd (AG-4) v1 genome