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Lag0015287 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015287
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:9700050..9700703
RNA-Seq ExpressionLag0015287
SyntenyLag0015287
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD35472.1 unnamed protein product, partial [Brassica oleracea]1.2e-1332.98Show/hide
Query:  QDQFNYLSSSPTKNLQSHE--------DWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKD
        +D F + S +  K  +  E         W PP  R+ K NTDAAW     SGG GWI+RD  G LI AG+ K          EA A+   ++  T    D
Subjt:  QDQFNYLSSSPTKNLQSHE--------DWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKD

Query:  YPDLIVPPLLVESDAAEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFDPSLYLRA
                + +E+D+ ++++++N E E    +  +I EI +L S+    + +YY RS N  A  IAR       S F SF P LY  A
Subjt:  YPDLIVPPLLVESDAAEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFDPSLYLRA

XP_015387358.1 uncharacterized protein LOC107177672 [Citrus sinensis]1.4e-1232.68Show/hide
Query:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVED
        W PPP R +K+N DAA   +    G+G ++R+S G +I A   K C +  +  MEA A+L  I+   +       +   P+++ESD+ E+++L+      
Subjt:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVED

Query:  HSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFD
         +E++  ++EI     ++NA+S  Y  R  N +AH+IA+VA    NSV +  D
Subjt:  HSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFD

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.6e-1333.33Show/hide
Query:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVED
        W PP +  WK+NT+AAW   +N+GG+GWI+RD  G +I+A       + +I  +E  AI E ++   ++          P+ +ESD+ E I LL+ + +D
Subjt:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVED

Query:  HSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN
         +EI  +++EI  +       S  +  R  N +AH +AR A  N
Subjt:  HSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.0e-1637.33Show/hide
Query:  KNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIK
        K L +   W PPP   W +N DA+W DS++ GG+GWIIR   G ++ AG+       ++KL+EA AILE ++N T         ++ PL +E+D+AE+  
Subjt:  KNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIK

Query:  LLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAA
        LLN + ED ++   V++EI +L       +F    R  N  AHS+A+ A+
Subjt:  LLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.5e-1435.17Show/hide
Query:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKN-PTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVE
        W PP +  WK+NTDAAW   +N+GG+GWI+RD  G +I+A      T+ +I  +E  AI E ++    E  +        P+ +ESD+ E I LL+ + +
Subjt:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKN-PTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVE

Query:  DHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN
        D +EI  +++EI  +       S  +  R  N +AH +AR A  N
Subjt:  DHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN

TrEMBL top hitse value%identityAlignment
A0A1S8ADA4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment)2.1e-1133.33Show/hide
Query:  SSPTKNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAA
        +SP  +  S  +W  PP   +K+N DAA   S+   G+G +IR+S G ++ A    T  + D+  MEA A+L  I++  +         V P+++ESD+ 
Subjt:  SSPTKNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAA

Query:  EIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFF
        E++ L   +    +EI   I EI +     N +S  Y  RS NS+AHSIA++A    + VF+
Subjt:  EIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFF

A0A3P6ESY2 RNase H domain-containing protein (Fragment)6.0e-1432.98Show/hide
Query:  QDQFNYLSSSPTKNLQSHE--------DWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKD
        +D F + S +  K  +  E         W PP  R+ K NTDAAW     SGG GWI+RD  G LI AG+ K          EA A+   ++  T    D
Subjt:  QDQFNYLSSSPTKNLQSHE--------DWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKD

Query:  YPDLIVPPLLVESDAAEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFDPSLYLRA
                + +E+D+ ++++++N E E    +  +I EI +L S+    + +YY RS N  A  IAR       S F SF P LY  A
Subjt:  YPDLIVPPLLVESDAAEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFDPSLYLRA

A0A6J1CP26 uncharacterized protein LOC1110134121.8e-1333.33Show/hide
Query:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVED
        W PP +  WK+NT+AAW   +N+GG+GWI+RD  G +I+A       + +I  +E  AI E ++   ++          P+ +ESD+ E I LL+ + +D
Subjt:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVED

Query:  HSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN
         +EI  +++EI  +       S  +  R  N +AH +AR A  N
Subjt:  HSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN

A0A6J1DNV9 uncharacterized protein LOC1110224039.9e-1737.33Show/hide
Query:  KNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIK
        K L +   W PPP   W +N DA+W DS++ GG+GWIIR   G ++ AG+       ++KL+EA AILE ++N T         ++ PL +E+D+AE+  
Subjt:  KNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIK

Query:  LLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAA
        LLN + ED ++   V++EI +L       +F    R  N  AHS+A+ A+
Subjt:  LLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAA

A0A6J1DSV1 uncharacterized protein LOC1110236087.1e-1535.17Show/hide
Query:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKN-PTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVE
        W PP +  WK+NTDAAW   +N+GG+GWI+RD  G +I+A      T+ +I  +E  AI E ++    E  +        P+ +ESD+ E I LL+ + +
Subjt:  WLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKN-PTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVE

Query:  DHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN
        D +EI  +++EI  +       S  +  R  N +AH +AR A  N
Subjt:  DHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.5e-0424.09Show/hide
Query:  PARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVEDHSEI
        P+   K N DA+  +     G+GW+IR+S G+++E G  K   +   +  E  A++  I+  +             ++ E D + + +L+N +  D+  +
Subjt:  PARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDAAEIIKLLNWEVEDHSEI

Query:  TLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVA
           +D I S      +  FI+ HR +N  A ++ + A
Subjt:  TLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0424.03Show/hide
Query:  SSSPTKNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDA
        ++ P++N +    W PP     K N DA+  + +   G+GWI+R+S G++IE G  K   +   +  E   ++  I+        Y       ++ E D 
Subjt:  SSSPTKNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLVESDA

Query:  AEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVA
          I +++N +   +  +   +D I S      +  F + HR +N  A  +A+ A
Subjt:  AEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAAATGGAGATGGTTCAAGACCAATTCAATTATCTATCGAGCAGTCCAACGAAGAACCTTCAGAGTCATGAAGACTGGCTGCCGCCGCCTGCTCGTCATTGGAA
GATAAACACGGACGCTGCCTGGTTTGACTCCTCTAATTCGGGGGGAGTGGGATGGATCATCCGTGACTCCGCAGGTTCATTGATCGAGGCGGGGAGCTCGAAGACATGCA
CTAAAGAAGATATCAAATTGATGGAGGCTCGAGCCATTCTTGAAAGAATTAAGAATCCCACTGAGAAAATTAAAGATTACCCGGATTTGATTGTCCCTCCATTGCTGGTG
GAGTCGGATGCGGCTGAAATTATCAAGCTCCTCAACTGGGAAGTGGAAGATCATTCGGAAATCACGTTGGTGATCGATGAAATTGGAAGCTTGGCGAGTCTGGCTAATGC
GAATTCTTTCATCTACTACCATAGGTCTCGCAATTCTCTAGCGCATTCCATAGCGCGTGTTGCTGCTTCTAATGGAAATTCTGTGTTTTTTAGTTTTGATCCCTCTCTGT
ACTTGAGAGCGGATTCAACCCTCGATGGGTTGTTTTGTAAGGGATGGCTCTTCTCCATTCTAGAGAAGATGGTGGTTGTACCAAACTGTTTTTCTGTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAAATGGAGATGGTTCAAGACCAATTCAATTATCTATCGAGCAGTCCAACGAAGAACCTTCAGAGTCATGAAGACTGGCTGCCGCCGCCTGCTCGTCATTGGAA
GATAAACACGGACGCTGCCTGGTTTGACTCCTCTAATTCGGGGGGAGTGGGATGGATCATCCGTGACTCCGCAGGTTCATTGATCGAGGCGGGGAGCTCGAAGACATGCA
CTAAAGAAGATATCAAATTGATGGAGGCTCGAGCCATTCTTGAAAGAATTAAGAATCCCACTGAGAAAATTAAAGATTACCCGGATTTGATTGTCCCTCCATTGCTGGTG
GAGTCGGATGCGGCTGAAATTATCAAGCTCCTCAACTGGGAAGTGGAAGATCATTCGGAAATCACGTTGGTGATCGATGAAATTGGAAGCTTGGCGAGTCTGGCTAATGC
GAATTCTTTCATCTACTACCATAGGTCTCGCAATTCTCTAGCGCATTCCATAGCGCGTGTTGCTGCTTCTAATGGAAATTCTGTGTTTTTTAGTTTTGATCCCTCTCTGT
ACTTGAGAGCGGATTCAACCCTCGATGGGTTGTTTTGTAAGGGATGGCTCTTCTCCATTCTAGAGAAGATGGTGGTTGTACCAAACTGTTTTTCTGTTGAATGA
Protein sequenceShow/hide protein sequence
MSKMEMVQDQFNYLSSSPTKNLQSHEDWLPPPARHWKINTDAAWFDSSNSGGVGWIIRDSAGSLIEAGSSKTCTKEDIKLMEARAILERIKNPTEKIKDYPDLIVPPLLV
ESDAAEIIKLLNWEVEDHSEITLVIDEIGSLASLANANSFIYYHRSRNSLAHSIARVAASNGNSVFFSFDPSLYLRADSTLDGLFCKGWLFSILEKMVVVPNCFSVE