; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015313 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015313
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:10177142..10178032
RNA-Seq ExpressionLag0015313
SyntenyLag0015313
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG73177.1 hypothetical protein EZV62_001756 [Acer yangbiense]2.5e-1838.64Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSLR-------------------------MDRPLRRGFRLQD-EEGKE
        GPW FDR++++ +EP  +G + D+EFN   FWVQIHN+PM   T E+   LG  +R                         +D PL R  R+    +GK 
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSLR-------------------------MDRPLRRGFRLQD-EEGKE

Query:  FRCPVLYERLPDFCYDCGCLGHSRRECGVVGE
            + YER+PDFCY C  LGH+ REC V G+
Subjt:  FRCPVLYERLPDFCYDCGCLGHSRRECGVVGE

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.0e-2436.63Show/hide
Query:  IMEDLVSSVESSWGNAHRICRGEFICYSIQIQGGKDASD-----DYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGS
        I  + + SV  S    H   R E +  +I +   K  S+       GPW F++SL+VL  P +    LD+ FN C FW+QIHN+P    + EMA  LG  
Subjt:  IMEDLVSSVESSWGNAHRICRGEFICYSIQIQGGKDASD-----DYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGS

Query:  L-------------------------RMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC
        L                          + +PLRRG +L++ +GK+  CP+ YE+LPDFCY+CG +GHS REC
Subjt:  L-------------------------RMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.2e-2040Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSL-------------------------RMDRPLRRGFRLQDEEGKEF
        GPW FD+SL++L    +A   LD++ + C FWVQIH +     T++MA+ LG  L                          + +PLRRG +++  +GK+ 
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSL-------------------------RMDRPLRRGFRLQDEEGKEF

Query:  RCPVLYERLPDFCYDCGCLGHSRRE
         CP+ YERLPDFCY CGC+GHS RE
Subjt:  RCPVLYERLPDFCYDCGCLGHSRRE

XP_024033132.1 uncharacterized protein LOC112095437 [Citrus clementina]2.9e-1929.44Show/hide
Query:  GWVVVKALVIMEDLVSSVESSWGNAH----RICRGEFICYSIQIQGGKDASDDYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTRE
        G +++   V  E L ++++ +W   H             +    +  K    + GPW FDR+L+VL+EP+  GS+    F+   FW++IHNVP+      
Subjt:  GWVVVKALVIMEDLVSSVESSWGNAH----RICRGEFICYSIQIQGGKDASDDYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTRE

Query:  MAQSLGG-------------------------SLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC
        + + LG                          S+ + +PL++   L+ E+ ++   PV+YERLPDFC+ CGC+GH  REC
Subjt:  MAQSLGG-------------------------SLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC

XP_024036938.1 uncharacterized protein LOC112096937 [Citrus clementina]3.3e-1844.66Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSL-RMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRR
        GPW FDR+L VL EPR  G V    F    FWVQI NV +    ++  + LGG +  ++ PL +   L+ E   +   PV+YE LPDFCY CG +GH  +
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSL-RMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRR

Query:  ECG
        ECG
Subjt:  ECG

TrEMBL top hitse value%identityAlignment
A0A5C7HA35 CCHC-type domain-containing protein8.6e-1732.6Show/hide
Query:  GWVVVKALVIMEDLVSSVESSWGNAHRI---CRGEFICYSIQIQGGKDASDDY--GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTR
        G V+    V  E  +  +E  W    R+     GE I +    +  +D +  +  GPW FD SL+ L++P   G +  ++FN   FWVQIHN+P+    R
Subjt:  GWVVVKALVIMEDLVSSVESSWGNAHRI---CRGEFICYSIQIQGGKDASDDY--GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTR

Query:  EMAQSLGGSLR------------------------MDRPLRRGFRLQ-DEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC
         MA+ L   L                         + RPL R  RL+ D  GK     + YERLP+FCY CG +GH+ R+C
Subjt:  EMAQSLGGSLR------------------------MDRPLRRGFRLQ-DEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC

A0A5C7IT66 CCHC-type domain-containing protein3.0e-1738.64Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGG-------------------------SLRMDRPLRRGFRLQD-EEGKE
        GPW+FD +L+VL+EP   G++  + FN   FWVQI NVPM   T+++ + LG                          ++ +D PLRR  R+    +G+E
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGG-------------------------SLRMDRPLRRGFRLQD-EEGKE

Query:  FRCPVLYERLPDFCYDCGCLGHSRRECGVVGE
           P+ YERLP FC+ CG +GHS REC   GE
Subjt:  FRCPVLYERLPDFCYDCGCLGHSRRECGVVGE

A0A5C7IV18 CCHC-type domain-containing protein1.2e-1838.64Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSLR-------------------------MDRPLRRGFRLQD-EEGKE
        GPW FDR++++ +EP  +G + D+EFN   FWVQIHN+PM   T E+   LG  +R                         +D PL R  R+    +GK 
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSLR-------------------------MDRPLRRGFRLQD-EEGKE

Query:  FRCPVLYERLPDFCYDCGCLGHSRRECGVVGE
            + YER+PDFCY C  LGH+ REC V G+
Subjt:  FRCPVLYERLPDFCYDCGCLGHSRRECGVVGE

A0A6J1D765 uncharacterized protein LOC1110179025.1e-2536.63Show/hide
Query:  IMEDLVSSVESSWGNAHRICRGEFICYSIQIQGGKDASD-----DYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGS
        I  + + SV  S    H   R E +  +I +   K  S+       GPW F++SL+VL  P +    LD+ FN C FW+QIHN+P    + EMA  LG  
Subjt:  IMEDLVSSVESSWGNAHRICRGEFICYSIQIQGGKDASD-----DYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGS

Query:  L-------------------------RMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC
        L                          + +PLRRG +L++ +GK+  CP+ YE+LPDFCY+CG +GHS REC
Subjt:  L-------------------------RMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRREC

A0A6J1DVS4 uncharacterized protein LOC1110235555.8e-2140Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSL-------------------------RMDRPLRRGFRLQDEEGKEF
        GPW FD+SL++L    +A   LD++ + C FWVQIH +     T++MA+ LG  L                          + +PLRRG +++  +GK+ 
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSL-------------------------RMDRPLRRGFRLQDEEGKEF

Query:  RCPVLYERLPDFCYDCGCLGHSRRE
         CP+ YERLPDFCY CGC+GHS RE
Subjt:  RCPVLYERLPDFCYDCGCLGHSRRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding4.5e-1032.46Show/hide
Query:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSLRMDRPLRRGFRLQDEEGKEFR-CPVLYERLPDFCYDCGCLGHSRR
        GPW+F+  + V++      S  D EF    FW+QI  +P+R+ T  +  S+G         R G  L+   G++       YE+L +FC  CG L H   
Subjt:  GPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQIHNVPMRWQTREMAQSLGGSLRMDRPLRRGFRLQDEEGKEFR-CPVLYERLPDFCYDCGCLGHSRR

Query:  ECGVVGEGVSGQQG
        EC       SG QG
Subjt:  ECGVVGEGVSGQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTGTCCGTGTGGTTGCTAGTAGGGTGGGAGGGTGTTAGTGGTGTGTGCATTGGTGTTCTGGGGGTGTGGGGTTGGGTAGTGGTTAAAGCCCTGGTGATAATGGA
GGATCTTGTCAGTAGCGTGGAAAGTTCATGGGGCAACGCGCATAGAATCTGCAGGGGAGAATTTATTTGCTATTCAATTCAGATCCAAGGGGGAAAAGATGCGAGTGATG
ACTACGGGCCGTGGGCTTTCGATCGTTCTCTTGTGGTCCTAAAGGAGCCGAGGTCCGCAGGGTCGGTATTGGATGTGGAGTTTAATGACTGTGTCTTTTGGGTCCAGATT
CACAATGTACCTATGCGCTGGCAGACGAGAGAGATGGCTCAGTCTTTGGGTGGTTCTTTGAGGATGGATCGGCCGCTGAGGAGGGGGTTTCGGTTGCAAGATGAAGAGGG
TAAAGAATTTCGGTGCCCGGTACTGTATGAGCGGCTGCCAGATTTTTGCTATGATTGTGGTTGTCTGGGGCACTCAAGAAGGGAGTGTGGGGTTGTTGGTGAAGGTGTGT
CGGGTCAGCAGGGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTGTCCGTGTGGTTGCTAGTAGGGTGGGAGGGTGTTAGTGGTGTGTGCATTGGTGTTCTGGGGGTGTGGGGTTGGGTAGTGGTTAAAGCCCTGGTGATAATGGA
GGATCTTGTCAGTAGCGTGGAAAGTTCATGGGGCAACGCGCATAGAATCTGCAGGGGAGAATTTATTTGCTATTCAATTCAGATCCAAGGGGGAAAAGATGCGAGTGATG
ACTACGGGCCGTGGGCTTTCGATCGTTCTCTTGTGGTCCTAAAGGAGCCGAGGTCCGCAGGGTCGGTATTGGATGTGGAGTTTAATGACTGTGTCTTTTGGGTCCAGATT
CACAATGTACCTATGCGCTGGCAGACGAGAGAGATGGCTCAGTCTTTGGGTGGTTCTTTGAGGATGGATCGGCCGCTGAGGAGGGGGTTTCGGTTGCAAGATGAAGAGGG
TAAAGAATTTCGGTGCCCGGTACTGTATGAGCGGCTGCCAGATTTTTGCTATGATTGTGGTTGTCTGGGGCACTCAAGAAGGGAGTGTGGGGTTGTTGGTGAAGGTGTGT
CGGGTCAGCAGGGTGAGTAG
Protein sequenceShow/hide protein sequence
MWLSVWLLVGWEGVSGVCIGVLGVWGWVVVKALVIMEDLVSSVESSWGNAHRICRGEFICYSIQIQGGKDASDDYGPWAFDRSLVVLKEPRSAGSVLDVEFNDCVFWVQI
HNVPMRWQTREMAQSLGGSLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYDCGCLGHSRRECGVVGEGVSGQQGE