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Lag0015332 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015332
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationchr12:10565481..10569336
RNA-Seq ExpressionLag0015332
SyntenyLag0015332
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149515.1 uncharacterized protein LOC111017927 [Momordica charantia]2.2e-1651.11Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWK
        WNE LIR SFLE +A  ILNIP       DE+IW  D K  FSVKS YRLG  +    EV +SN + +   WK++W+T +P KVKIC W+
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWK

XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]2.6e-1445.05Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEV-SSSNHKYQEALWKRVWKTKLPPKVKICGWK
        W ++++R+ FL  +A TIL+IP  HN   D+IIW  + KG FSVKSAY +   +I N+EV  SS+   +  LW+++W   +PPKV+I  WK
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEV-SSSNHKYQEALWKRVWKTKLPPKVKICGWK

XP_023894347.1 uncharacterized protein LOC112006297 [Quercus suber]2.6e-1434.35Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMI-HNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDITNL
        W  E +R  FL  +A+TILNIP  +N+  D +IW  + +G+F+VKSAY +   ++  N E   S+   +  LWKR+W  K+P K+KI  W+     +  +
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMI-HNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDITNL

Query:  LWECKITQVTYRGTLCRNF---CDRSLASNS
                + +RG  C +F   CD++L S +
Subjt:  LWECKITQVTYRGTLCRNF---CDRSLASNS

XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]5.9e-1445.05Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEV-SSSNHKYQEALWKRVWKTKLPPKVKICGWK
        W ++++R  FL  +A TIL+IP  HN   D+IIW  + KG FSVKSAY +   +I N+EV  SS+   +  LW+++W   +PPKV+I  WK
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEV-SSSNHKYQEALWKRVWKTKLPPKVKICGWK

XP_030963753.1 uncharacterized protein LOC115984908 [Quercus lobata]3.5e-1436.07Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEV---SSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDIT
        W  +L++  FL  DA+ IL IP  +N+  D +IW  + +G+F+VKSAY +   ++ + EV   SSSN K    LWKR+W  K+P K+KI  W+     + 
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEV---SSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDIT

Query:  NLLWECKITQVTYRGTLCRNFC
         +        +++RG  C +FC
Subjt:  NLLWECKITQVTYRGTLCRNFC

TrEMBL top hitse value%identityAlignment
A0A2N9I921 Reverse transcriptase domain-containing protein2.9e-1433.71Show/hide
Query:  ANISQFTVAQLKDPFGMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPK
        A +SQ   +Q +     WN  LI + FL  DA  I +IP  HN G D IIW +   G++SV+SAY L  Q       SSSN + Q+ALW +VW   LPPK
Subjt:  ANISQFTVAQLKDPFGMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPK

Query:  VKICGWKG--ETRDITNLLWECKITQVTYRGTLCRNFCDRSLASNSSRCVELSCNATMNENRAYGGVEWILRDWN
        VK   W+   E       LW+ K+     R   C   C+  +   S        N+ +          W   DW+
Subjt:  VKICGWKG--ETRDITNLLWECKITQVTYRGTLCRNFCDRSLASNSSRCVELSCNATMNENRAYGGVEWILRDWN

A0A5A7NZJ7 Ribonuclease H-like superfamily protein (Fragment)1.9e-1337.7Show/hide
Query:  VAQLKDPFGMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQ---MIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKIC
        V+QL    G WN++LI + F E D TTI+ I     M  DE++W++DPKG FSVKSAYR+  Q   ++ +    S   + +  LW RVW  K+  K+K+ 
Subjt:  VAQLKDPFGMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQ---MIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKIC

Query:  GWK--GETRDITNLLWECKITQ
         W         T+ LW  K+ +
Subjt:  GWK--GETRDITNLLWECKITQ

A0A6J1D5Y4 uncharacterized protein LOC1110179271.0e-1651.11Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWK
        WNE LIR SFLE +A  ILNIP       DE+IW  D K  FSVKS YRLG  +    EV +SN + +   WK++W+T +P KVKIC W+
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWK

B8AKR4 Histone deacetylase1.9e-1334.51Show/hide
Query:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMI---HNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDIT
        WNEEL+R  F   DA  IL I   H+ G D + W+YD  GIF+V+SAY++    +    N   SSS    +  LWK +W T++P KV+I  W+       
Subjt:  WNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMI---HNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDIT

Query:  NLLWECKITQVTYRGTLCRNFCDRSLASNSSRCVELSCNATM
         L  +C  TQ   +    RN     +     +C E   +AT+
Subjt:  NLLWECKITQVTYRGTLCRNFCDRSLASNSSRCVELSCNATM

S8D7I6 Uncharacterized protein (Fragment)1.4e-1343.01Show/hide
Query:  GMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQM-IHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWK
        G WN+  +RE F  IDA  IL+IP       D++IWNY   GI+SVKS Y L   + +     +SS+H     LWK +WK  LPPK+ + GW+
Subjt:  GMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQM-IHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTCCTCCCCGTTTTCCCCTTCGGAATCGATGGTTTCCAAGTCCCACTGTAGAATCGTCGTCCTTCGGCCATATGAACCGCCAAATCCCGCGTATTATGATCGT
CGACGAGGACCCAACAAAGAGCGTCTCCTCAGAGTCGTTGTCCTCCTCCGCCCCTCGTGACTGGATTTTGGTGGGGAGCCACAAATATGGAAAAGAAAATTCACTAGCAG
AGTTGGAAGAAGCTTTGTTGATGTTAAGGACGATCCATGGCTACCAACAGAAGGAACAACTAAGCCAATATTCACGCACCCTAGCTAACATAAGCCAATTCACGGTTGCA
CAACTCAAAGATCCTTTTGGCATGTGGAATGAGGAGTTGATTCGTGAATCATTCTTGGAAATAGATGCGACGACTATTCTGAATATCCCAACTAGACATAATATGGGATG
TGATGAAATTATTTGGAATTATGATCCGAAAGGTATCTTCTCGGTGAAAAGCGCCTATAGGCTTGGATGTCAGATGATTCATAACGTAGAGGTCTCTTCATCAAATCATA
AGTATCAGGAAGCTTTGTGGAAGAGAGTTTGGAAAACAAAACTCCCTCCCAAAGTTAAGATATGTGGTTGGAAGGGAGAAACCAGAGATATCACCAATCTCCTATGGGAA
TGCAAGATTACTCAAGTGACCTATCGAGGAACATTATGTCGAAACTTCTGCGATCGATCGTTGGCTTCCAATTCCAGCCGGTGTGTGGAACTCAGCTGCAACGCGACGAT
GAACGAGAATCGAGCCTACGGTGGTGTCGAATGGATTCTTAGGGATTGGAACGGTCATCCACTGGCTGCGGGCTTCAAATGTATCTTCAGGCAGTGGAAGATCAATTGGC
TCGAGTCGATAGTGAAGGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTCCTCCCCGTTTTCCCCTTCGGAATCGATGGTTTCCAAGTCCCACTGTAGAATCGTCGTCCTTCGGCCATATGAACCGCCAAATCCCGCGTATTATGATCGT
CGACGAGGACCCAACAAAGAGCGTCTCCTCAGAGTCGTTGTCCTCCTCCGCCCCTCGTGACTGGATTTTGGTGGGGAGCCACAAATATGGAAAAGAAAATTCACTAGCAG
AGTTGGAAGAAGCTTTGTTGATGTTAAGGACGATCCATGGCTACCAACAGAAGGAACAACTAAGCCAATATTCACGCACCCTAGCTAACATAAGCCAATTCACGGTTGCA
CAACTCAAAGATCCTTTTGGCATGTGGAATGAGGAGTTGATTCGTGAATCATTCTTGGAAATAGATGCGACGACTATTCTGAATATCCCAACTAGACATAATATGGGATG
TGATGAAATTATTTGGAATTATGATCCGAAAGGTATCTTCTCGGTGAAAAGCGCCTATAGGCTTGGATGTCAGATGATTCATAACGTAGAGGTCTCTTCATCAAATCATA
AGTATCAGGAAGCTTTGTGGAAGAGAGTTTGGAAAACAAAACTCCCTCCCAAAGTTAAGATATGTGGTTGGAAGGGAGAAACCAGAGATATCACCAATCTCCTATGGGAA
TGCAAGATTACTCAAGTGACCTATCGAGGAACATTATGTCGAAACTTCTGCGATCGATCGTTGGCTTCCAATTCCAGCCGGTGTGTGGAACTCAGCTGCAACGCGACGAT
GAACGAGAATCGAGCCTACGGTGGTGTCGAATGGATTCTTAGGGATTGGAACGGTCATCCACTGGCTGCGGGCTTCAAATGTATCTTCAGGCAGTGGAAGATCAATTGGC
TCGAGTCGATAGTGAAGGGATAA
Protein sequenceShow/hide protein sequence
MAPPPRFPLRNRWFPSPTVESSSFGHMNRQIPRIMIVDEDPTKSVSSESLSSSAPRDWILVGSHKYGKENSLAELEEALLMLRTIHGYQQKEQLSQYSRTLANISQFTVA
QLKDPFGMWNEELIRESFLEIDATTILNIPTRHNMGCDEIIWNYDPKGIFSVKSAYRLGCQMIHNVEVSSSNHKYQEALWKRVWKTKLPPKVKICGWKGETRDITNLLWE
CKITQVTYRGTLCRNFCDRSLASNSSRCVELSCNATMNENRAYGGVEWILRDWNGHPLAAGFKCIFRQWKINWLESIVKG