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Lag0015349 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015349
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr12:11146497..11147498
RNA-Seq ExpressionLag0015349
SyntenyLag0015349
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030268129.1 origin recognition complex subunit 4-like [Sparus aurata]5.1e-0528.29Show/hide
Query:  KGLGRPRKFPSLS----SSCQGHPRGAYTIMGKSLGRPR-------------KFPSLSSSCHGHPRGAYTLLGKSLRRPRKFPSLSSSCHGHPRGAYTLL
        K  GRPRK PS+S    S  +G   G         GRP+             +  S++    G P+G+   L K  +  R+      +      G+   +
Subjt:  KGLGRPRKFPSLS----SSCQGHPRGAYTIMGKSLGRPR-------------KFPSLSSSCHGHPRGAYTLLGKSLRRPRKFPSLSSSCHGHPRGAYTLL

Query:  GKSLGRPRKFPSLSSSYHGHPRGAYTLLGKSLGRPRKFPSLSSSCH-----GHPRG----------AYTLLGKSLRRPRKFPSLSSSCHGHPRGAYTLLG
         +  GRPRK    S S      G  T+  +  GRPRK   ++++C+     G P+G          A   +G+S  R    PS +    G PR     L 
Subjt:  GKSLGRPRKFPSLSSSYHGHPRGAYTLLGKSLGRPRKFPSLSSSCH-----GHPRG----------AYTLLGKSLRRPRKFPSLSSSCHGHPRGAYTLLG

Query:  KSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSVMVIPGVR
           GRPRK+P LS++    P+     + K LGRPRK+P +       PG R
Subjt:  KSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSVMVIPGVR
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTG
TCAGGGTCATCCCAGGGGTGCGTACACTATTATGGGGAAAAGCTTGGGGAGGCCTAGAAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACA
CTCTTCTGGGGAAAAGCTTGAGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTAGGGAAAAGCTTGGGGAGG
CCCAGGAAATTCCCGAGCCTCTCTTCAAGCTATCACGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTC
AAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGAGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTG
CGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCAAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTG
GGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGAGGCCCAGGAAATTCCCGAGCCTCT
CTTCAAGCTGTCACGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAGGCTTGGGGAGGCCAGGAAATTCCCGAGCCTCTCTTCAAGTTGTCACGGTCATCCCAGG
GGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTG
TCAGGGTCATCCCAGGGGTGCGTACACTATTATGGGGAAAAGCTTGGGGAGGCCTAGAAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACA
CTCTTCTGGGGAAAAGCTTGAGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTAGGGAAAAGCTTGGGGAGG
CCCAGGAAATTCCCGAGCCTCTCTTCAAGCTATCACGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTC
AAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGAGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTG
CGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCAAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTG
GGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGAGGCCCAGGAAATTCCCGAGCCTCT
CTTCAAGCTGTCACGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAGGCTTGGGGAGGCCAGGAAATTCCCGAGCCTCTCTTCAAGTTGTCACGGTCATCCCAGG
GGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAG
Protein sequenceShow/hide protein sequence
MVGLGVGMLGLGMTVRTLFWGKGLGRPRKFPSLSSSCQGHPRGAYTIMGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLRRPRKFPSLSSSCHGHPRGAYTLLGKSLGR
PRKFPSLSSSYHGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLRRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSL
GRPRKFPSLSSSVMVIPGVRTLFWGKAWEAQEIPEPLFKLSRSSQGGAYTLLGKAWGGQEIPEPLFKLSRSSQGCVHSSGEKLGEA