; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015391 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015391
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr12:12061247..12061628
RNA-Seq ExpressionLag0015391
SyntenyLag0015391
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]2.6e-1660.87Show/hide
Query:  FLSALHVFPLLLPFLCP-FA-SSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDS
        FLS    FP +  F    FA +S + + +KDL+S IFLLSNICNLVSIRLDS +FILWKFQLT+ILKAHKLFGF+DGS+  PSQ +  S ++
Subjt:  FLSALHVFPLLLPFLCP-FA-SSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDS

XP_022152751.1 uncharacterized protein LOC111020396 isoform X1 [Momordica charantia]1.3e-1563.64Show/hide
Query:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV
        ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + +  S  +SS S D  S  +
Subjt:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV

XP_022152753.1 uncharacterized protein LOC111020396 isoform X3 [Momordica charantia]1.3e-1563.64Show/hide
Query:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV
        ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + +  S  +SS S D  S  +
Subjt:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV

XP_022152754.1 uncharacterized protein LOC111020396 isoform X4 [Momordica charantia]1.3e-1563.64Show/hide
Query:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV
        ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + +  S  +SS S D  S  +
Subjt:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV

XP_022158689.1 uncharacterized protein LOC111025150 [Momordica charantia]4.5e-1669.7Show/hide
Query:  KDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDSSVS
        KDL+S IFLLSNICNLVS+RLDS NF+LWKFQLT+ILKAHKL+GF+DGS P P++ +    D S S
Subjt:  KDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDSSVS

TrEMBL top hitse value%identityAlignment
A0A6J1D9L6 uncharacterized protein LOC1110188921.3e-1660.87Show/hide
Query:  FLSALHVFPLLLPFLCP-FA-SSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDS
        FLS    FP +  F    FA +S + + +KDL+S IFLLSNICNLVSIRLDS +FILWKFQLT+ILKAHKLFGF+DGS+  PSQ +  S ++
Subjt:  FLSALHVFPLLLPFLCP-FA-SSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDS

A0A6J1DFQ7 uncharacterized protein LOC111020396 isoform X36.4e-1663.64Show/hide
Query:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV
        ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + +  S  +SS S D  S  +
Subjt:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV

A0A6J1DGZ1 uncharacterized protein LOC111020396 isoform X46.4e-1663.64Show/hide
Query:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV
        ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + +  S  +SS S D  S  +
Subjt:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV

A0A6J1DIP4 uncharacterized protein LOC111020396 isoform X16.4e-1663.64Show/hide
Query:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV
        ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + +  S  +SS S D  S  +
Subjt:  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSR-DSSVSADGDSSSV

A0A6J1E049 uncharacterized protein LOC1110251502.2e-1669.7Show/hide
Query:  KDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDSSVS
        KDL+S IFLLSNICNLVS+RLDS NF+LWKFQLT+ILKAHKL+GF+DGS P P++ +    D S S
Subjt:  KDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDSSVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGCCTGATTTTCTCTCTGCTCTCCACGTATTTCCTCTTTTGCTGCCTTTTCTTTGTCCTTTTGCTTCATCAATGGCGATAGATTTACAGAAAGATTTGAATTCTCTTAT
TTTTCTTCTTTCAAATATCTGCAATCTGGTGTCCATCCGTCTTGATTCTATGAATTTTATCCTTTGGAAGTTTCAGTTAACATCGATTCTTAAAGCTCACAAGTTATTTG
GGTTTGTCGATGGCTCCTTACCTGTTCCTTCCCAGACGATTTGCCCTAGTCGAGATTCGTCTGTGTCCGCTGATGGTGATTCCTCATCTGTTGGTCCTCCTCCGCTGTTC
CTCTTCCAAATCCTAAATATGATGATTGGATTGCAAAGGATCATGCCTTGA
mRNA sequenceShow/hide mRNA sequence
TCGCCTGATTTTCTCTCTGCTCTCCACGTATTTCCTCTTTTGCTGCCTTTTCTTTGTCCTTTTGCTTCATCAATGGCGATAGATTTACAGAAAGATTTGAATTCTCTTAT
TTTTCTTCTTTCAAATATCTGCAATCTGGTGTCCATCCGTCTTGATTCTATGAATTTTATCCTTTGGAAGTTTCAGTTAACATCGATTCTTAAAGCTCACAAGTTATTTG
GGTTTGTCGATGGCTCCTTACCTGTTCCTTCCCAGACGATTTGCCCTAGTCGAGATTCGTCTGTGTCCGCTGATGGTGATTCCTCATCTGTTGGTCCTCCTCCGCTGTTC
CTCTTCCAAATCCTAAATATGATGATTGGATTGCAAAGGATCATGCCTTGA
Protein sequenceShow/hide protein sequence
SPDFLSALHVFPLLLPFLCPFASSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDSSVSADGDSSSVGPPPLF
LFQILNMMIGLQRIMP