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Lag0015399 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015399
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionchaperonin 60 beta
Genome locationchr12:12205204..12210186
RNA-Seq ExpressionLag0015399
SyntenyLag0015399
Gene Ontology termsGO:0006457 - protein folding (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038875486.1 something about silencing protein 10 isoform X1 [Benincasa hispida]9.3e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
XP_038875489.1 something about silencing protein 10 isoform X2 [Benincasa hispida]9.3e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
XP_038875490.1 something about silencing protein 10 isoform X3 [Benincasa hispida]9.3e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
XP_038875491.1 something about silencing protein 10 isoform X4 [Benincasa hispida]9.3e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLESKVNP+LNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
TrEMBL top hitse value%identityAlignment
A0A1S3CBM7 something about silencing protein 10 isoform X27.7e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLE+KVNPILNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
A0A1S3CCS3 something about silencing protein 10 isoform X17.7e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLE+KVNPILNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
A0A5A7TE39 Something about silencing protein 10 isoform X17.7e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLE+KVNPILNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
A0A5D3DMP9 Something about silencing protein 10 isoform X17.7e-0481.82Show/hide
Query:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
        L++S  ELIGLLSE NEAVDQLE+KVNPILNKV
Subjt:  LANSTLELIGLLSEFNEAVDQLESKVNPILNKV
SwissProt top hitse value%identityAlignment
C0Z361 Chaperonin 60 subunit beta 3, chloroplastic3.9e-0550Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A+KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
P08927 RuBisCO large subunit-binding protein subunit beta, chloroplastic5.1e-0550Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
P21240 Chaperonin 60 subunit beta 1, chloroplastic5.1e-0550Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic5.1e-0550Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
Q9LJE4 Chaperonin 60 subunit beta 2, chloroplastic5.1e-0550Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
Arabidopsis top hitse value%identityAlignment
AT1G55490.1 chaperonin 60 beta3.7e-0650Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
AT1G55490.2 chaperonin 60 beta3.7e-0650Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
AT3G13470.1 TCP-1/cpn60 chaperonin family protein3.7e-0650Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
AT5G56500.1 TCP-1/cpn60 chaperonin family protein2.8e-0650Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A+KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
AT5G56500.2 TCP-1/cpn60 chaperonin family protein2.8e-0650Show/hide
Query:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL
        V+  VELED VENIGAKLVRQ A+KTNDLA   +T  ++       E V  + +  NP+L
Subjt:  VSCNVELEDLVENIGAKLVRQNATKTNDLA--NSTLELIGLLSEFNEAVDQLESKVNPIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCTTTGTTTGCAAAGGTACCTTGTGCAACCAAAGCTGCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCCGAACAATCAAATTCCAACAATCGTCGGCTAGTCC
TCCTTCCAACCATCACGCGAGATTCAAGAAGCCTCATGATAGCCTCATTCCAATAGTCTCTTGTAATGTTGAATTGGAGGATCTAGTTGAGAACATTGGTGCGAAGCTAG
TCAGACAAAATGCTACAAAAACCAATGACTTGGCTAATTCTACTCTAGAGTTAATTGGTTTGCTCTCTGAATTCAATGAAGCAGTGGATCAACTTGAGAGCAAAGTTAAT
CCAATTTTAAACAAGGTGATGGAGATTACTATGAATTGGGTGACGTTGAGGAGGAGGTCTGAGGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCTTTGTTTGCAAAGGTACCTTGTGCAACCAAAGCTGCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCCGAACAATCAAATTCCAACAATCGTCGGCTAGTCC
TCCTTCCAACCATCACGCGAGATTCAAGAAGCCTCATGATAGCCTCATTCCAATAGTCTCTTGTAATGTTGAATTGGAGGATCTAGTTGAGAACATTGGTGCGAAGCTAG
TCAGACAAAATGCTACAAAAACCAATGACTTGGCTAATTCTACTCTAGAGTTAATTGGTTTGCTCTCTGAATTCAATGAAGCAGTGGATCAACTTGAGAGCAAAGTTAAT
CCAATTTTAAACAAGGTGATGGAGATTACTATGAATTGGGTGACGTTGAGGAGGAGGTCTGAGGAGGAATAA
Protein sequenceShow/hide protein sequence
MNSLFAKVPCATKAARPERVPLLELRTIKFQQSSASPPSNHHARFKKPHDSLIPIVSCNVELEDLVENIGAKLVRQNATKTNDLANSTLELIGLLSEFNEAVDQLESKVN
PILNKVMEITMNWVTLRRRSEEE