; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015428 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015428
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat
Genome locationchr12:12874434..12878160
RNA-Seq ExpressionLag0015428
SyntenyLag0015428
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597564.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.8e-1260.94Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCSSVIHVTLNL
        MNKVHKAEKLFDSMLRLGI+P+NYTYGAFIKSLCKS L  P+ ++    LY     ++ +  N+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCSSVIHVTLNL

KAG7029008.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-1067.27Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLFDSMLRLGI+P+NYTYGAFIKSLCKS      +        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

XP_022934625.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucurbita moschata]2.5e-1169.09Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLFDSMLRLGI+PDNYTYGAFIKSLCKS     ++        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

XP_022975218.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucurbita maxima]4.3e-1169.09Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLFDSMLRLGI+PDNYTYGAFIKSLCKS      +        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

XP_023539285.1 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Cucurbita pepo subsp. pepo]4.3e-1169.09Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLFDSMLRLGI+PDNYTYGAFIKSLCKS      +        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

TrEMBL top hitse value%identityAlignment
A0A0A0L5W1 Uncharacterized protein2.8e-0857.63Show/hide
Query:  NKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLY-----NGCS
        N+  KAEKLFDSMLRLGI+PDNYTYGA IKSLCKS      + +K + ++     NGC+
Subjt:  NKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLY-----NGCS

A0A1S3AXI6 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial2.4e-0785.71Show/hide
Query:  NKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKS
        N+V KAEKLF SMLRLGI+PDNYTYGA IKSLCKS
Subjt:  NKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKS

A0A6J1C7X8 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial1.6e-0861.82Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLF+ MLRLGI+PD YTY  FIKSLCKS      K        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

A0A6J1F885 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial1.2e-1169.09Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLFDSMLRLGI+PDNYTYGAFIKSLCKS     ++        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

A0A6J1IIL6 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial2.1e-1169.09Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS
        MNKVHKAEKLFDSMLRLGI+PDNYTYGAFIKSLCKS      +        NGC+
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCS

SwissProt top hitse value%identityAlignment
Q8L6Y7 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial8.9e-0460Show/hide
Query:  KAEKLFDSMLRLGIRPDNYTYGAFIKSLCK
        KA+KLFD +L LG+ PD YTY  +I  LCK
Subjt:  KAEKLFDSMLRLGIRPDNYTYGAFIKSLCK

Q9LSQ2 Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial2.8e-0553.85Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALE
        M KV KAE+L  +MLR+G++PDN+TY   IK+L +S  E
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALE

Arabidopsis top hitse value%identityAlignment
AT2G38420.1 Pentatricopeptide repeat (PPR) superfamily protein6.3e-0560Show/hide
Query:  KAEKLFDSMLRLGIRPDNYTYGAFIKSLCK
        KA+KLFD +L LG+ PD YTY  +I  LCK
Subjt:  KAEKLFDSMLRLGIRPDNYTYGAFIKSLCK

AT3G16890.1 pentatricopeptide (PPR) domain protein 402.0e-0653.85Show/hide
Query:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALE
        M KV KAE+L  +MLR+G++PDN+TY   IK+L +S  E
Subjt:  MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAAGTTCATAAAGCTGAGAAGCTTTTTGATTCGATGTTAAGGTTGGGTATACGGCCTGACAATTATACATACGGTGCTTTTATTAAGTCATTGTGCAAGTCAGC
TTTGGAGTTTCCTCTGAAGTGGGAAAAACAGAAAGGCTTGTATAATGGATGTTCATCCGTCATTCATGTGACCTTGAACTTATCAGTTTTTGAACAAGTGCAAATTCATT
ATTGTTGCCAATGTGAAAAGTTAATACTTTTGATAGAGGTTAAGTGGATGAAGTTGTATGTGCAATGGAGGCCATGGGTTTTGACCCGTAGAAATTTTCTCCAAGAACAT
GCTGTGTTTGGGTCGTGTCAAGATGCTGTCCTTGGGATAGAGGAATATTTTGTCTATTTGCCAAGTCTGGACCACTGCATTGATCTGTTTGGTTCTAGCCATTCTGCAAG
GATAGTTACTCGTCGTGATGGAGGCGAATTAGTTGGGACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAAAGTTCATAAAGCTGAGAAGCTTTTTGATTCGATGTTAAGGTTGGGTATACGGCCTGACAATTATACATACGGTGCTTTTATTAAGTCATTGTGCAAGTCAGC
TTTGGAGTTTCCTCTGAAGTGGGAAAAACAGAAAGGCTTGTATAATGGATGTTCATCCGTCATTCATGTGACCTTGAACTTATCAGTTTTTGAACAAGTGCAAATTCATT
ATTGTTGCCAATGTGAAAAGTTAATACTTTTGATAGAGGTTAAGTGGATGAAGTTGTATGTGCAATGGAGGCCATGGGTTTTGACCCGTAGAAATTTTCTCCAAGAACAT
GCTGTGTTTGGGTCGTGTCAAGATGCTGTCCTTGGGATAGAGGAATATTTTGTCTATTTGCCAAGTCTGGACCACTGCATTGATCTGTTTGGTTCTAGCCATTCTGCAAG
GATAGTTACTCGTCGTGATGGAGGCGAATTAGTTGGGACCTGA
Protein sequenceShow/hide protein sequence
MNKVHKAEKLFDSMLRLGIRPDNYTYGAFIKSLCKSALEFPLKWEKQKGLYNGCSSVIHVTLNLSVFEQVQIHYCCQCEKLILLIEVKWMKLYVQWRPWVLTRRNFLQEH
AVFGSCQDAVLGIEEYFVYLPSLDHCIDLFGSSHSARIVTRRDGGELVGT