; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015450 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015450
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr12:13282546..13283555
RNA-Seq ExpressionLag0015450
SyntenyLag0015450
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.5e-5339.87Show/hide
Query:  MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQ
        M  +VP KFK+    Q+D   D   H+DAY  WMD +  +EA RCRVF+ TL G AR WF ++ R SI SF+ LAR FVTQF+G R R +P   LLT+KQ
Subjt:  MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQ

Query:  GPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR---------GKRHQVEGRGRSRLEHSSANGQADQRPRS
           ESL+DY+ RF+ E LQVEG  D V+L A +SG++DE L  S G+  P T+ E ++RAQR          KR     R   + E S    Q  +  + 
Subjt:  GPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR---------GKRHQVEGRGRSRLEHSSANGQADQRPRS

Query:  RRVMRNQKPDSTEK--------------------------LRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQ
         R  +   P   EK                          ++    +R++ +YC+FHRDHGH T++C  L++E+E LIR GYLKE+V     + P     
Subjt:  RRVMRNQKPDSTEK--------------------------LRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQ

Query:  GKGGANPPLEIRTILG
        G+   +P  EIRTI+G
Subjt:  GKGGANPPLEIRTILG

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.5e-4334.59Show/hide
Query:  MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQ
        M  + P +F +     YDG++D  +H++ Y T M+   A++A  CR F LTL G AR+WF ++   SI SF +L+R F + F  AR R KP   LLTVKQ
Subjt:  MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQ

Query:  GPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQA---DQR---------
           E+L+DYI R++ E+ QV+GYDDG+AL+ ++ GL+   L  S+ +  P +Y E + RA++    +   + R++ +  S  G+    DQR         
Subjt:  GPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQA---DQR---------

Query:  ----------------------------------PRSRRVMRNQKPD---STEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEF
                                          PR + +M+ + P    +   ++ +P RRN NKYC FH+DHGH T EC +L+++IE+L+R+G L+E+
Subjt:  ----------------------------------PRSRRVMRNQKPD---STEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEF

Query:  VGN--DRSKRPLPVDQGK
        V N  DR K   P    K
Subjt:  VGN--DRSKRPLPVDQGK

XP_030924206.1 uncharacterized protein LOC115951026 [Quercus lobata]1.5e-4336.27Show/hide
Query:  GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQG
        G  +P KFK+S+   YDG +D   HI  + T M      +   CR F  TL G AR WF KIP  S+ SF EL++ FV  F+G +  ++   +LLT++QG
Subjt:  GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQG

Query:  PRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKPD
          ESL+ +I RF+ E L V+  DD + L A  +G+  +  ++ + E +P+T  E                                      V+   K D
Subjt:  PRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKPD

Query:  ST----EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG
         +    EK++ DP++RN+NKYC FHRDHGH T EC  L+ +IE LIR+G LK FVG DR+   L     +    P  EIR I+G
Subjt:  ST----EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]1.3e-4437.29Show/hide
Query:  GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQG
        G  +P KFK+ +   YDG +D   HI  + T M      +   CR F  TL G AR WF KIP  S+ SF EL++ FV  F+G +  ++   +LLT++QG
Subjt:  GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQG

Query:  PRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEF-MTRAQRGKRHQV----------EGRGRSRLEHS---------SA
          ESL+ +I RF+ E L V+  DD + L A  +G+  +  ++ + E +P+T  E    RA+R + H V          +GR   R E           S 
Subjt:  PRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEF-MTRAQRGKRHQV----------EGRGRSRLEHS---------SA

Query:  NGQADQRPRSRRVMRNQKPDS---TEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRT
        N      P ++ +M+ +   S    EK++ DP++RN+NKYC FHRDHGH T EC  L+ +IE LIR+G LK FVG DR+   L     +    P  EIR 
Subjt:  NGQADQRPRSRRVMRNQKPDS---TEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRT

Query:  ILG
        I+G
Subjt:  ILG

XP_030970001.1 uncharacterized protein LOC115990293 [Quercus lobata]2.7e-4537.32Show/hide
Query:  GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQG
        G  +P KFK+ +   YDG +D   HI  + T M      +   CRVF  TL G A+ WF KIP  S+ SF EL++ FV  F+G +  ++   NLLT++QG
Subjt:  GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQG

Query:  PRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKPD
          ESL+ +I RF+ E L V+  DD + L A  +G+  +  ++ + E +P++  E +  AQ                ++     A +R RS RV+   K D
Subjt:  PRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKPD

Query:  ST----EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG
         +    EK+R DP++ NRNKYC FHRDHGH T EC  L+ +IE LIR+G L+ F+G D     +     +    P  EIR I+G
Subjt:  ST----EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG

TrEMBL top hitse value%identityAlignment
A0A2N9EKS3 Ribonuclease H2.8e-4037.67Show/hide
Query:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE
        +P KF++ +   +DG KD   H++++ T M      +   CR F  TL G AR WF KI   S+ SF +L+R F   F+GA+   +P  +LL +KQ   E
Subjt:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE

Query:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRG--------KRHQVEGRGRSRLEHSSANGQADQ--------R
        +L+ Y+ RF+ E L V+G DD V LTA ISGLQ    L S+ +  P T  E M  AQR          R Q  G+ R R E  +  G  ++         
Subjt:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRG--------KRHQVEGRGRSRLEHSSANGQADQ--------R

Query:  PRSRRVMRNQKPDSTE---KLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLEI
        P     M+ +   + +   KL  DPD+R R+KYC FHRDHGH T +C  L+ +IE LI++G L+ FV    R  RP    QG     PP+E+
Subjt:  PRSRRVMRNQKPDSTE---KLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLEI

A0A2N9GC82 Uncharacterized protein2.2e-4038.46Show/hide
Query:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE
        +P KF++     +DG KDL  H++++ T M      +   CR F  TL G AR WF K+   S+ SF +L+R F   F+G +   +P  +LL V+Q   E
Subjt:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE

Query:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKP-DST
        +L+ Y+ RF+ E L V+G DD V LTA ISGLQ    L S+ +  P T  E M  AQR             +    A    DQ    +R   +  P    
Subjt:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKP-DST

Query:  EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLE
         KL  DPD+R R+KYC FHRDHGH T +C  L+ +IE LI++G L+ FV    R  RP    QG     PP E
Subjt:  EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLE

A0A2N9GH90 Ribonuclease H2.8e-4037.67Show/hide
Query:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE
        +P KF++ +   +DG KD   H++++ T M      +   CR F  TL G AR WF KI   S+ SF +L+R F   F+GA+   +P  +LL +KQ   E
Subjt:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE

Query:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRG--------KRHQVEGRGRSRLEHSSANGQADQ--------R
        +L+ Y+ RF+ E L V+G DD V LTA ISGLQ    L S+ +  P T  E M  AQR          R Q  G+ R R E  +  G  ++         
Subjt:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRG--------KRHQVEGRGRSRLEHSSANGQADQ--------R

Query:  PRSRRVMRNQKPDSTE---KLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLEI
        P     M+ +   + +   KL  DPD+R R+KYC FHRDHGH T +C  L+ +IE LI++G L+ FV    R  RP    QG     PP+E+
Subjt:  PRSRRVMRNQKPDSTE---KLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLEI

A0A6J1D9W7 uncharacterized protein LOC1110187083.7e-4032.7Show/hide
Query:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE
        +P KFK      YDG KD K +++ +   MDFH A++A +CR F + LTG AR W+ ++P +SI ++ +L R F+ QF   +  +K + +L T++Q    
Subjt:  VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRE

Query:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR------------GKRHQVEGRGRS------------------
        +L++Y+ RF  E L+V    D  A+   ++GL DE L   +GE  P T+ E + +A++            G+  +  GRGRS                  
Subjt:  SLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR------------GKRHQVEGRGRS------------------

Query:  --RLEHSSA-NGQADQRPRSR---------RVMRNQKPDS-------TEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGND
          R E+  A +G    RP  R          ++ N +           EKLR  P+RR+++KYC FHR+HGH T +C +L+ +IE LI++GY K+FVG  
Subjt:  --RLEHSSA-NGQADQRPRSR---------RVMRNQKPDS-------TEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGND

Query:  RSKRPLPVDQGKGGANPP
        R+      ++ K    PP
Subjt:  RSKRPLPVDQGKGGANPP

A0A6J1DWY0 uncharacterized protein LOC1110252931.7e-5339.87Show/hide
Query:  MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQ
        M  +VP KFK+    Q+D   D   H+DAY  WMD +  +EA RCRVF+ TL G AR WF ++ R SI SF+ LAR FVTQF+G R R +P   LLT+KQ
Subjt:  MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQ

Query:  GPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR---------GKRHQVEGRGRSRLEHSSANGQADQRPRS
           ESL+DY+ RF+ E LQVEG  D V+L A +SG++DE L  S G+  P T+ E ++RAQR          KR     R   + E S    Q  +  + 
Subjt:  GPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR---------GKRHQVEGRGRSRLEHSSANGQADQRPRS

Query:  RRVMRNQKPDSTEK--------------------------LRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQ
         R  +   P   EK                          ++    +R++ +YC+FHRDHGH T++C  L++E+E LIR GYLKE+V     + P     
Subjt:  RRVMRNQKPDSTEK--------------------------LRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQ

Query:  GKGGANPPLEIRTILG
        G+   +P  EIRTI+G
Subjt:  GKGGANPPLEIRTILG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGAGAGGTGCCGCATAAATTCAAAATATCAAACTTCCCGCAGTATGATGGAAAGAAAGATCTGAAACAGCACATAGATGCATACCTAACTTGGATGGATTTTCA
CAGGGCGAACGAAGCGACAAGGTGTCGAGTCTTTGCACTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCAAGATCCCACGAAAGTCAATTGATTCTTTTAGAGAGC
TGGCCCGACCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAAAAGCCTCAGATCAACCTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGGATTATATT
AACAGATTTAGTTACGAAGTTTTGCAGGTGGAAGGTTACGATGACGGGGTTGCCTTGACCGCGATGATTTCAGGTTTGCAAGATGAAACGTTGCTCAACTCAATCGGAGA
GAGCCAGCCACGAACATACGTGGAGTTTATGACCCGAGCACAAAGAGGAAAGAGGCACCAGGTCGAGGGAAGAGGCCGGAGTCGACTTGAGCACTCCTCGGCCAATGGCC
AGGCCGACCAGAGGCCAAGGAGCCGCAGGGTCATGCGAAACCAAAAGCCAGATTCGACAGAAAAGTTGAGATTAGACCCCGACAGGAGGAACAGAAACAAATACTGCATG
TTCCACAGAGACCACGGTCACACAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAG
CAAGAGACCACTGCCAGTAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATACGAACAATTTTAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGAGAGGTGCCGCATAAATTCAAAATATCAAACTTCCCGCAGTATGATGGAAAGAAAGATCTGAAACAGCACATAGATGCATACCTAACTTGGATGGATTTTCA
CAGGGCGAACGAAGCGACAAGGTGTCGAGTCTTTGCACTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCAAGATCCCACGAAAGTCAATTGATTCTTTTAGAGAGC
TGGCCCGACCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAAAAGCCTCAGATCAACCTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGGATTATATT
AACAGATTTAGTTACGAAGTTTTGCAGGTGGAAGGTTACGATGACGGGGTTGCCTTGACCGCGATGATTTCAGGTTTGCAAGATGAAACGTTGCTCAACTCAATCGGAGA
GAGCCAGCCACGAACATACGTGGAGTTTATGACCCGAGCACAAAGAGGAAAGAGGCACCAGGTCGAGGGAAGAGGCCGGAGTCGACTTGAGCACTCCTCGGCCAATGGCC
AGGCCGACCAGAGGCCAAGGAGCCGCAGGGTCATGCGAAACCAAAAGCCAGATTCGACAGAAAAGTTGAGATTAGACCCCGACAGGAGGAACAGAAACAAATACTGCATG
TTCCACAGAGACCACGGTCACACAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAG
CAAGAGACCACTGCCAGTAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATACGAACAATTTTAGGATGA
Protein sequenceShow/hide protein sequence
MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYI
NRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKPDSTEKLRLDPDRRNRNKYCM
FHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG