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Lag0015452 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015452
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:13288348..13289703
RNA-Seq ExpressionLag0015452
SyntenyLag0015452
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]5.5e-3065.96Show/hide
Query:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        SQP I+  PI  NNFELK GL+QM R+ +F+G  ++DPH HL SFLEICGT+KMNGV+ +AI+LRLFPFSLQD+AKDWLE++ P SI TW+ LA
Subjt:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

XP_038972405.1 uncharacterized protein LOC120104748 [Phoenix dactylifera]4.8e-2661.7Show/hide
Query:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        +QP IV   + ANNFE+K GL+QMV+   F G PS+DPH+HL +FLEIC T+KMNGV+ +AIRLRLFPFSL+DKAK WL S  P S  TW+ L+
Subjt:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

XP_038973879.1 uncharacterized protein LOC120105457 [Phoenix dactylifera]4.8e-2661.7Show/hide
Query:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        +QP IV   + ANNFE+K GL+QMV+   F G PS+DPH+HL +FLEIC T+KMNGV+ +AIRLRLFPFSL+DKAK WL S  P S  TW+ L+
Subjt:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

XP_038976409.1 uncharacterized protein LOC113461320 [Phoenix dactylifera]4.8e-2661.7Show/hide
Query:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        +QP IV   + ANNFE+K GL+QMV+   F G PS+DPH+HL +FLEIC T+KMNGV+ +AIRLRLFPFSL+DKAK WL S  P S  TW+ L+
Subjt:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

XP_038976653.1 uncharacterized protein LOC120107448 [Phoenix dactylifera]4.8e-2661.7Show/hide
Query:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        +QP IV   + ANNFE+K GL+QMV+   F G PS+DPH+HL +FLEIC T+KMNGV+ +AIRLRLFPFSL+DKAK WL S  P S  TW+ L+
Subjt:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

TrEMBL top hitse value%identityAlignment
A0A1S3UJL2 uncharacterized protein LOC1067659804.8e-2459.14Show/hide
Query:  QPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        Q  IV  PIQA+NFE+K  L+Q+++   F G  S+DP+SHL +FLEIC T+K+ GV+ +AIRLRLFPFSL+DKAK+WL+S   GSI+TW+E+A
Subjt:  QPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

A0A1S3UKD4 uncharacterized protein LOC1067662671.7e-2452.46Show/hide
Query:  ESPTSSAQGEENE----PDYDLDDPYLDSQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQ
        E  TS+   E+N      DY + DP    Q  IV  PIQANNFE+K  L+Q+++   F G  S+DP+SHL +FL IC T+K NGV+ +AI LRLFPFSL+
Subjt:  ESPTSSAQGEENE----PDYDLDDPYLDSQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQ

Query:  DKAKDWLESLEPGSINTWDELA
        DKAK+WL+SL  GSI+TW+++A
Subjt:  DKAKDWLESLEPGSINTWDELA

A0A4R5JE57 Retrotrans_gag domain-containing protein (Fragment)4.8e-2454.63Show/hide
Query:  NEPDYDLDDPYLDS-QPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGS
        N P  +  +P +D  Q  I    I ANNFELK  ++QM+++  F G  ++DP+ HL SFLEIC T K NGV+ +A+RLRLFPFSL+DK K WL SL  GS
Subjt:  NEPDYDLDDPYLDS-QPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGS

Query:  INTWDELA
        INTW+ELA
Subjt:  INTWDELA

A0A6J0ZYV0 uncharacterized protein LOC1104134133.1e-2363.95Show/hide
Query:  IQANNFELKTGLVQMVR-DCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        I ANNFE+K   +QM++    F G PS DP+SHL +FLEIC T K NGVT +AIRLRLFPFSL+DKAK WL SL  GSI TW++LA
Subjt:  IQANNFELKTGLVQMVR-DCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

A0A6P6XAQ1 Reverse transcriptase4.8e-2457.45Show/hide
Query:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA
        SQ  IV   + ANNFE+K  L+QMV+   + G+ ++DP+SHL +FLEIC T+K NGV+ +AI+LRLFPFSL+DKAK WL+S  P +  TWDELA
Subjt:  SQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWLESLEPGSINTWDELA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCTCCACCACAAGCGAATCACCTACTTCTTCGGCACAAGGAGAAGAGAACGAACCAGACTACGATCTGGATGATCCATACCTCGACTCACAACCCATAATTGT
CTACGCTCCCATCCAAGCCAATAACTTCGAATTGAAGACGGGACTGGTACAAATGGTGAGGGACTGCTCGTTCAAGGGGCATCCTTCTAAGGATCCGCATTCCCACCTTT
GGTCATTTTTGGAGATTTGTGGGACCATGAAGATGAATGGAGTAACGACAAATGCCATCAGATTAAGACTCTTTCCTTTTTCCCTGCAAGACAAAGCAAAGGACTGGCTG
GAATCTTTGGAGCCTGGAAGCATAAATACTTGGGATGAGCTAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCCTCCACCACAAGCGAATCACCTACTTCTTCGGCACAAGGAGAAGAGAACGAACCAGACTACGATCTGGATGATCCATACCTCGACTCACAACCCATAATTGT
CTACGCTCCCATCCAAGCCAATAACTTCGAATTGAAGACGGGACTGGTACAAATGGTGAGGGACTGCTCGTTCAAGGGGCATCCTTCTAAGGATCCGCATTCCCACCTTT
GGTCATTTTTGGAGATTTGTGGGACCATGAAGATGAATGGAGTAACGACAAATGCCATCAGATTAAGACTCTTTCCTTTTTCCCTGCAAGACAAAGCAAAGGACTGGCTG
GAATCTTTGGAGCCTGGAAGCATAAATACTTGGGATGAGCTAGCCTAG
Protein sequenceShow/hide protein sequence
MAASTTSESPTSSAQGEENEPDYDLDDPYLDSQPIIVYAPIQANNFELKTGLVQMVRDCSFKGHPSKDPHSHLWSFLEICGTMKMNGVTTNAIRLRLFPFSLQDKAKDWL
ESLEPGSINTWDELA