; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015471 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015471
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:13715038..13721937
RNA-Seq ExpressionLag0015471
SyntenyLag0015471
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75186.1 hypothetical protein VITISV_001913 [Vitis vinifera]8.4e-2365.48Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS
        DDCSRFTW +L++ KSD   IIP+FF +V TQF+  IKVFRSDNAPEL FT+FF  +G  H FSCVERPQQNS+VE K+  LL+
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS

KAA0065480.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]9.6e-2770.24Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS
        DDC RFTW Y++R KSD ++I+P+FF L+ETQFSK IK FRSDNAPEL+ TEFFA KGT H FSCVE+PQQNSVVE K+  LL+
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS

KYP48432.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.5e-2165.82Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKN
        DD SRFTW YL++NKS+ I IIP+F+A VE QF   IK FRSDNA EL F E+F+ KG  H FSCVERPQQNSV+E K+
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKN

RVW99848.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.9e-2355.56Show/hide
Query:  EMLSSHLQAAKTEPIAATVTHT-ADDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVE
        + L+S ++       A TV+++  DDCSRFTW +L++ KSD   IIP+FF +V TQF+  IKVFRSDNAPEL FT+FF  +G  H FSCVERPQQNS+VE
Subjt:  EMLSSHLQAAKTEPIAATVTHT-ADDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVE

Query:  HKNGILLS
         K+  LL+
Subjt:  HKNGILLS

XP_022883903.1 uncharacterized protein LOC111400748 [Olea europaea var. sylvestris]2.9e-2367.47Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILL
        DDCS+FTW +L++ KSDA  +I RFF++ ETQF   IKVFRSDNAPEL F +FFA KG  H FSCVERPQQNSVVE K+  LL
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILL

TrEMBL top hitse value%identityAlignment
A0A151S0V0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-2165.82Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKN
        DD SRFTW YL++NKS+ I IIP+F+A VE QF   IK FRSDNA EL F E+F+ KG  H FSCVERPQQNSV+E K+
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKN

A0A438IT12 Retrovirus-related Pol polyprotein from transposon RE11.4e-2355.56Show/hide
Query:  EMLSSHLQAAKTEPIAATVTHT-ADDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVE
        + L+S ++       A TV+++  DDCSRFTW +L++ KSD   IIP+FF +V TQF+  IKVFRSDNAPEL FT+FF  +G  H FSCVERPQQNS+VE
Subjt:  EMLSSHLQAAKTEPIAATVTHT-ADDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVE

Query:  HKNGILLS
         K+  LL+
Subjt:  HKNGILLS

A0A5A7VE66 Cysteine-rich RLK (Receptor-like protein kinase) 84.6e-2770.24Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS
        DDC RFTW Y++R KSD ++I+P+FF L+ETQFSK IK FRSDNAPEL+ TEFFA KGT H FSCVE+PQQNSVVE K+  LL+
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS

A0A5D3E5P0 No apical meristem (NAM) protein2.2e-2136.97Show/hide
Query:  NFFQSLNTNQYSQLMEMLSSHLQAAKTEPIAATVT-----------------------------HTADDCSRF-TWTYLM--------------------
        +FF SLN+ QYSQLM +L++HLQAA T PI  T T                             H   D S F  W++                      
Subjt:  NFFQSLNTNQYSQLMEMLSSHLQAAKTEPIAATVT-----------------------------HTADDCSRF-TWTYLM--------------------

Query:  ---------------------------------------RNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNS
                                               R KSD ++I+P+FF L+ETQFSK IK FRSDNA EL+FTEFFA KG+ H FSCVERPQQNS
Subjt:  ---------------------------------------RNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNS

Query:  VVEHKNGILLS
        VVE K+  LL+
Subjt:  VVEHKNGILLS

A5C102 Integrase catalytic domain-containing protein4.1e-2365.48Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS
        DDCSRFTW +L++ KSD   IIP+FF +V TQF+  IKVFRSDNAPEL FT+FF  +G  H FSCVERPQQNS+VE K+  LL+
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLS

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.3e-0432.32Show/hide
Query:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPE-LRFTEFFASKGTAHHFSCVERPQQNSVVEHKNG-------ILLSKELCPKT
        D  +R+TW Y ++ KS        F  L+E +F   I  F SDN  E +   E+F+  G +H  S    P+ N + E K+         LLS    PKT
Subjt:  DDCSRFTWTYLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPE-LRFTEFFASKGTAHHFSCVERPQQNSVVEHKNG-------ILLSKELCPKT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTATGGAGTGGAAAAAACGGTGTGAGTGGATACTTTCATATTGGGAAGCGATAAGACATGGCACAAACCCATGCGATGACACAACAGCGCCAATGGTGAAACG
GAGCAGTGAGCGGCAGCGATTTCATGGTGTGAAGCTCTTCACGGACGCGACAGTGGGCTCTTCTGGTTATGGAGCGATCATTATGGATGAGGCGGGATGTCCACAAGCAG
CTATGGAATTTTTTGATCAAGCATCTCACACACCTTTAGCAGCTGAGGTACAAGCTATTATTCATGTGCTCACATGTGATGTGGTAAGGTACGACATTCATGTTACTTTG
TCTATTAAGTTTGTAAACGAACTTTATTCTACTGTTCAAGCCCAAATCTTGGTAATGAAGTCAATTTTGACAATCGATCAAGTTTTTTCTTTGATCATTCAAGAAGAACA
TCAGTGTCCAGAAGATATTGTTCCTCCTACAGAATCAATTTCTCTTCTTGCACCCACTGCAGATTCTTCCAAGAAGACTAATTTCTTTCAAAGCCTTAATACAAATCAGT
ATTCTCAGCTGATGGAGATGCTTTCATCTCATTTACAAGCTGCCAAAACTGAACCAATTGCTGCTACAGTAACTCATACAGCAGATGACTGCTCAAGATTTACTTGGACC
TATCTCATGCGTAACAAATCAGATGCCATTTATATTATTCCTCGATTCTTTGCACTTGTCGAAACTCAGTTTTCTAAAACTATCAAAGTGTTTCGATCTGACAATGCACC
AGAACTTCGTTTTACTGAATTCTTTGCTTCTAAAGGGACTGCCCATCATTTTTCTTGTGTTGAGAGACCACAACAAAACTCTGTTGTTGAGCACAAGAATGGAATTCTTT
TGTCTAAGGAACTATGTCCTAAGACACCTCAAGAAGTTGAGGACATGAGACATATGTCCTATGCAGTAGCCTATTGCAAGACAAGCAAGCACGTTGAATCTAAAGGATAT
ATTGTCGATTCATTCACGAAGGCTCTCTCAGCTAAAGTGTATGAGGGTCATCTAGATGGTCTAGGTCTACGAGTTATGTACAAAGATGTAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTATGGAGTGGAAAAAACGGTGTGAGTGGATACTTTCATATTGGGAAGCGATAAGACATGGCACAAACCCATGCGATGACACAACAGCGCCAATGGTGAAACG
GAGCAGTGAGCGGCAGCGATTTCATGGTGTGAAGCTCTTCACGGACGCGACAGTGGGCTCTTCTGGTTATGGAGCGATCATTATGGATGAGGCGGGATGTCCACAAGCAG
CTATGGAATTTTTTGATCAAGCATCTCACACACCTTTAGCAGCTGAGGTACAAGCTATTATTCATGTGCTCACATGTGATGTGGTAAGGTACGACATTCATGTTACTTTG
TCTATTAAGTTTGTAAACGAACTTTATTCTACTGTTCAAGCCCAAATCTTGGTAATGAAGTCAATTTTGACAATCGATCAAGTTTTTTCTTTGATCATTCAAGAAGAACA
TCAGTGTCCAGAAGATATTGTTCCTCCTACAGAATCAATTTCTCTTCTTGCACCCACTGCAGATTCTTCCAAGAAGACTAATTTCTTTCAAAGCCTTAATACAAATCAGT
ATTCTCAGCTGATGGAGATGCTTTCATCTCATTTACAAGCTGCCAAAACTGAACCAATTGCTGCTACAGTAACTCATACAGCAGATGACTGCTCAAGATTTACTTGGACC
TATCTCATGCGTAACAAATCAGATGCCATTTATATTATTCCTCGATTCTTTGCACTTGTCGAAACTCAGTTTTCTAAAACTATCAAAGTGTTTCGATCTGACAATGCACC
AGAACTTCGTTTTACTGAATTCTTTGCTTCTAAAGGGACTGCCCATCATTTTTCTTGTGTTGAGAGACCACAACAAAACTCTGTTGTTGAGCACAAGAATGGAATTCTTT
TGTCTAAGGAACTATGTCCTAAGACACCTCAAGAAGTTGAGGACATGAGACATATGTCCTATGCAGTAGCCTATTGCAAGACAAGCAAGCACGTTGAATCTAAAGGATAT
ATTGTCGATTCATTCACGAAGGCTCTCTCAGCTAAAGTGTATGAGGGTCATCTAGATGGTCTAGGTCTACGAGTTATGTACAAAGATGTAATCTAG
Protein sequenceShow/hide protein sequence
MDAMEWKKRCEWILSYWEAIRHGTNPCDDTTAPMVKRSSERQRFHGVKLFTDATVGSSGYGAIIMDEAGCPQAAMEFFDQASHTPLAAEVQAIIHVLTCDVVRYDIHVTL
SIKFVNELYSTVQAQILVMKSILTIDQVFSLIIQEEHQCPEDIVPPTESISLLAPTADSSKKTNFFQSLNTNQYSQLMEMLSSHLQAAKTEPIAATVTHTADDCSRFTWT
YLMRNKSDAIYIIPRFFALVETQFSKTIKVFRSDNAPELRFTEFFASKGTAHHFSCVERPQQNSVVEHKNGILLSKELCPKTPQEVEDMRHMSYAVAYCKTSKHVESKGY
IVDSFTKALSAKVYEGHLDGLGLRVMYKDVI