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Lag0015476 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015476
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:13837292..13838883
RNA-Seq ExpressionLag0015476
SyntenyLag0015476
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACY01923.1 hypothetical protein [Beta vulgaris]1.2e-0451.92Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVVTP
        +PDAFTD KKVTKSH+PAAN P + +IP     I N+S   +KR     V P
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVVTP

RVW26456.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.5e-0461.36Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR
        +PDAF D KKVTKSHIPAANTP++ D+P  Q  +TN+S    KR
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR

RVW51548.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.2e-0461.36Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR
        +PDAF D KKVTKSHIPAANTP++ D+P +Q  +TN+S    KR
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR

RVW79949.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.0e-0454Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVV
        +PDAF D KKVTKSHIPAANTP++ D+P  Q  +TN+S    KR    ++
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVV

XP_021841044.1 uncharacterized protein LOC110781105 [Spinacia oleracea]9.1e-0559.09Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR
        +PDAFTD KKVTKSHIPA N P++ +IPT    I N+S   +KR
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR

TrEMBL top hitse value%identityAlignment
A0A438C2Q1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0461.36Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR
        +PDAF D KKVTKSHIPAANTP++ D+P  Q  +TN+S    KR
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR

A0A438EV10 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-0561.36Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR
        +PDAF D KKVTKSHIPAANTP++ D+P +Q  +TN+S    KR
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR

A0A438H6C3 Retrovirus-related Pol polyprotein from transposon TNT 1-949.8e-0554Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVV
        +PDAF D KKVTKSHIPAANTP++ D+P  Q  +TN+S    KR    ++
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVV

A0A438HZK0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0461.36Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR
        +PDAF D KKVTKSHIPAANTP++ D+P  Q  +TN+S    KR
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKR

E2DMZ0 Uncharacterized protein5.8e-0551.92Show/hide
Query:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVVTP
        +PDAFTD KKVTKSH+PAAN P + +IP     I N+S   +KR     V P
Subjt:  MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVVTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGATGCATTTACAGATGCTAAGAAAGTGACCAAGTCACATATACCAGCTGCAAATACACCATCAAAATTTGATATCCCAACGCAACAAGTTATCATAACTAATGA
TTCTGCGACAGGCCAGAAGCGTGCACCCCACGCCGTCGTCACCCCCTCTCCATCTCTCTTGTCAATCGCTCTCCGCCGCTGCTCACGAACTGCACGCCGTCGTCTGAAGT
CGCCGCCATTGCCGCACGAACCCGCCAACACAAGACCAGTTGACGCATCCCCTTCTTCATCTAGTGCACATGGGGGTTCGATTCCGGTGATTTCCACTCGAGGCAGAGTG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGATGCATTTACAGATGCTAAGAAAGTGACCAAGTCACATATACCAGCTGCAAATACACCATCAAAATTTGATATCCCAACGCAACAAGTTATCATAACTAATGA
TTCTGCGACAGGCCAGAAGCGTGCACCCCACGCCGTCGTCACCCCCTCTCCATCTCTCTTGTCAATCGCTCTCCGCCGCTGCTCACGAACTGCACGCCGTCGTCTGAAGT
CGCCGCCATTGCCGCACGAACCCGCCAACACAAGACCAGTTGACGCATCCCCTTCTTCATCTAGTGCACATGGGGGTTCGATTCCGGTGATTTCCACTCGAGGCAGAGTG
TAG
Protein sequenceShow/hide protein sequence
MPDAFTDAKKVTKSHIPAANTPSKFDIPTQQVIITNDSATGQKRAPHAVVTPSPSLLSIALRRCSRTARRRLKSPPLPHEPANTRPVDASPSSSSAHGGSIPVISTRGRV