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Lag0015484 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015484
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr12:14011939..14012316
RNA-Seq ExpressionLag0015484
SyntenyLag0015484
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056341.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2559.18Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL+VD+LRF+LT EC  + A N +QA+R AYDRW+KAN+K R YILAS+SD+L+KK E    A++IM SL+ MFRQP + L+HEA+KY+Y  RM+EG+
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-2561.22Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        +LI+D+LRFVL  EC  V A NA+Q  R+ Y+RW KAN+K RAYILASLS++L+KK E    AR+IM SL+EMF Q SYQ++H+ALKY+YN RM EG+
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

TYK03174.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2559.18Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL+VD+LRF+LT EC  + A N +QA+R AYDRW+KAN+K R YILAS+SD+L+KK E    A++IM SL+ MFRQP + L+HEA+KY+Y  RM+EG+
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]1.8e-2562.24Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL++D+LRFVLT EC    A NA++  RDAYDRWVKAN+K R YILAS+S++LSKK E     R+IM SL+ +F QPS  L H+A+KYVYNCRM+EGS
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]8.2e-2662.24Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL++D+LRFVLT EC   LA N++Q  RDA+DRW KAN+K R YILAS+SD+LSKK E    AR+IM SL+ +F QPS  + H+A+KYVYNCRM+EGS
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

TrEMBL top hitse value%identityAlignment
A0A5A7US12 Gag/pol protein1.5e-2559.18Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL+VD+LRF+LT EC  + A N +QA+R AYDRW+KAN+K R YILAS+SD+L+KK E    A++IM SL+ MFRQP + L+HEA+KY+Y  RM+EG+
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

A0A5A7V6N0 Gag/pol protein1.1e-2561.22Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        +LI+D+LRFVL  EC  V A NA+Q  R+ Y+RW KAN+K RAYILASLS++L+KK E    AR+IM SL+EMF Q SYQ++H+ALKY+YN RM EG+
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

A0A5D3BVG4 Gag/pol protein1.5e-2559.18Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL+VD+LRF+LT EC  + A N +QA+R AYDRW+KAN+K R YILAS+SD+L+KK E    A++IM SL+ MFRQP + L+HEA+KY+Y  RM+EG+
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

A0A6J1DWG6 uncharacterized protein LOC1110250218.8e-2662.24Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL++D+LRFVLT EC    A NA++  RDAYDRWVKAN+K R YILAS+S++LSKK E     R+IM SL+ +F QPS  L H+A+KYVYNCRM+EGS
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

A0A6J1E205 uncharacterized protein LOC1110252583.9e-2662.24Show/hide
Query:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS
        IL++D+LRFVLT EC   LA N++Q  RDA+DRW KAN+K R YILAS+SD+LSKK E    AR+IM SL+ +F QPS  + H+A+KYVYNCRM+EGS
Subjt:  ILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTAATTGTTGACAATTTAAGGTTTGTCTTAACGAATGAGTGTTCTCTGGTTCTTGCTCGCAACGCATCTCAGGCAACTAGAGATGCGTATGACCGTTGGGTTAA
GGCCAATGATAAGGACCGAGCATATATCTTAGCGAGTCTGTCTGACATACTTTCTAAGAAATGCGAACCCTTTAATAATGCCAGAGATATAATGGGATCACTAAGGGAGA
TGTTTAGACAACCGTCCTATCAGCTCCAACATGAGGCTCTCAAGTATGTCTATAACTGTCGCATGGAAGAGGGCTCTTATTTTGTGGGATCATGTCCTGGATATGATGGT
CCAATTCAATGTGGCAAAGGCAAATGGGGCGGTCATCTACGAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCTAATTGTTGACAATTTAAGGTTTGTCTTAACGAATGAGTGTTCTCTGGTTCTTGCTCGCAACGCATCTCAGGCAACTAGAGATGCGTATGACCGTTGGGTTAA
GGCCAATGATAAGGACCGAGCATATATCTTAGCGAGTCTGTCTGACATACTTTCTAAGAAATGCGAACCCTTTAATAATGCCAGAGATATAATGGGATCACTAAGGGAGA
TGTTTAGACAACCGTCCTATCAGCTCCAACATGAGGCTCTCAAGTATGTCTATAACTGTCGCATGGAAGAGGGCTCTTATTTTGTGGGATCATGTCCTGGATATGATGGT
CCAATTCAATGTGGCAAAGGCAAATGGGGCGGTCATCTACGAGACTAG
Protein sequenceShow/hide protein sequence
MILIVDNLRFVLTNECSLVLARNASQATRDAYDRWVKANDKDRAYILASLSDILSKKCEPFNNARDIMGSLREMFRQPSYQLQHEALKYVYNCRMEEGSYFVGSCPGYDG
PIQCGKGKWGGHLRD