; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015492 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015492
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:14222632..14223373
RNA-Seq ExpressionLag0015492
SyntenyLag0015492
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8709065.1 hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus]4.1e-4250.73Show/hide
Query:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER---LVMVVQWSPV--------------VVLVEEQFYTQRMEEGM
        + D+EKFDG +NFGLWQVQVKD+LIQS L+KALKG            +PSD++ ++    +   +W  +               VL  E+F+  +MEEG 
Subjt:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER---LVMVVQWSPV--------------VVLVEEQFYTQRMEEGM

Query:  KISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKS-EGRTSQEDSVLVASNWKKKKDSVQKKG
        KISDHLS LNGI+SELE I VKI+DEDKALRLI SLP+S EHM+ +LMY+KE ++F++VTSKL+ EERRLK+ E ++S+  ++ V  N KK K S +K  
Subjt:  KISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKS-EGRTSQEDSVLVASNWKKKKDSVQKKG

Query:  CWECG
        CW CG
Subjt:  CWECG

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.1e-4248.46Show/hide
Query:  SPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNAS-----------------------------------------------ERLVMVVQ
        SP++  VEK+DG +NFGLWQVQVKDVLIQS LHKAL+G+P+  +S                                               E+L  + Q
Subjt:  SPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNAS-----------------------------------------------ERLVMVVQ

Query:  WSPVV--VLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTS
           +   + ++EQF+T RM+   KISDHLSVLN I+SELE I VK+EDEDKALRLILSL +S EHM+PILMY KETL +ADVT KLL EE+RL S G TS
Subjt:  WSPVV--VLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTS

Query:  QEDSVLVASNWKKKKDSVQKKGCWECG
         E +VL+  N KKK    +   CW+CG
Subjt:  QEDSVLVASNWKKKKDSVQKKGCWECG

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.7e-4349.34Show/hide
Query:  SPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNAS-----------------------------------------------ERLVMVVQ
        SP++ DVEK+DG +NFGLWQVQVKDVLIQS LHKAL+G+P+  +S                                               E+L  + Q
Subjt:  SPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNAS-----------------------------------------------ERLVMVVQ

Query:  WS--PVVVLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTS
            P  + ++EQF+T RM+   KISDHLSVLN I+SELE I VK+EDEDKALRLILSL +S EHM+PILMY KETL +ADVT KLL EE+RL S G TS
Subjt:  WS--PVVVLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTS

Query:  QEDSVLVASNWKKKKDSVQKKGCWECG
         E +VL+  N KKK    +   CW+CG
Subjt:  QEDSVLVASNWKKKKDSVQKKGCWECG

QHN81458.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]1.6e-4147.96Show/hide
Query:  MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASE-------------RLVMV------VQ--------WSPVV----------
        MS + S VK+++EKFDG +NFGLWQ+QVKDVLIQS LHKALK R S    E             RL +       VQ        W  +           
Subjt:  MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASE-------------RLVMV------VQ--------WSPVV----------

Query:  -VLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQEDSVL
         +L++EQF+  RM+  +KISDHLS +NGI+SELE I VKI+DEDKALRLILSLP+S E+++P+LMY KETL+F +V SKL+ EERR+K+EG TS + +++
Subjt:  -VLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQEDSVL

Query:  VASNWKKKKDSVQKKGCWECG
          S+   K +  +   CW+CG
Subjt:  VASNWKKKKDSVQKKGCWECG

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]4.3e-6057.83Show/hide
Query:  MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERL-----------------------------------------------
        MS FMSPVKIDVEKFDGM+NFGLWQVQVKDVLIQS LHKALKGRPS+ ASE+L                                               
Subjt:  MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERL-----------------------------------------------

Query:  -------VMVVQWSPVVVL-----------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSF
                    W  +  L           ++EQF+T +MEEGMKISDHLS LN II ELE IEVKI+DEDKALRLILSLP S EHM+PILMY K+TL+F
Subjt:  -------VMVVQWSPVVVL-----------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSF

Query:  ADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKG-CWECG
        A+VTSKLL EERRLKSEGRTS EDS LV SNWKKKKDSVQKK  CW CG
Subjt:  ADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKG-CWECG

TrEMBL top hitse value%identityAlignment
A0A6A3B141 CCHC-type domain-containing protein2.0e-4250.73Show/hide
Query:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER---LVMVVQWSPV--------------VVLVEEQFYTQRMEEGM
        + D+EKFDG +NFGLWQVQVKD+LIQS L+KALKG            +PSD++ ++    +   +W  +               VL  E+F+  +MEEG 
Subjt:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER---LVMVVQWSPV--------------VVLVEEQFYTQRMEEGM

Query:  KISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKS-EGRTSQEDSVLVASNWKKKKDSVQKKG
        KISDHLS LNGI+SELE I VKI+DEDKALRLI SLP+S EHM+ +LMY+KE ++F++VTSKL+ EERRLK+ E ++S+  ++ V  N KK K S +K  
Subjt:  KISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKS-EGRTSQEDSVLVASNWKKKKDSVQKKG

Query:  CWECG
        CW CG
Subjt:  CWECG

A0A6A3BK59 CCHC-type domain-containing protein2.0e-3944.68Show/hide
Query:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER-----------------------------LVMVVQWSPVVVL--
        + D+EKFDG +NFGLWQVQVKD+LIQS L+KALKG            +PSD++ ++                             L  V +WS    L  
Subjt:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER-----------------------------LVMVVQWSPVVVL--

Query:  ----------------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRL
                        ++E+F+  +MEEG KISDHLS LNGI+SELE I V+I+DEDKALRLI SLP+S EHM+ +LMY KE ++F++VTSKL+ EERRL
Subjt:  ----------------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRL

Query:  KS-EGRTSQEDSVLVASNWKKKKDSVQKKGCWECG
        K+ E ++S+  ++ V  N KK K S +K  CW CG
Subjt:  KS-EGRTSQEDSVLVASNWKKKKDSVQKKGCWECG

A0A6A3CWI3 CCHC-type domain-containing protein3.5e-3944.68Show/hide
Query:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER-----------------------------LVMVVQWSPVVVL--
        + D+EKFDG +NFGLWQVQVKD+LIQS L+KALKG            +PSD++ ++                             L  V +WS    L  
Subjt:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER-----------------------------LVMVVQWSPVVVL--

Query:  ----------------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRL
                        ++E+F+  +MEEG KISDHLS LNGI+SELE I V I+DEDKALRLI SLP+S EHM+ +LMY KE ++F++VTSKL+ EERRL
Subjt:  ----------------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRL

Query:  KS-EGRTSQEDSVLVASNWKKKKDSVQKKGCWECG
        K+ E ++S+  ++ V  N KK K S +K  CW CG
Subjt:  KS-EGRTSQEDSVLVASNWKKKKDSVQKKGCWECG

A0A6A3DA47 CCHC-type domain-containing protein3.5e-3944.68Show/hide
Query:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER-----------------------------LVMVVQWSPVVVL--
        + D+EKFDG +NFGLWQVQVKD+LIQS L+KALKG            +PSD++ ++                             L  V +WS    L  
Subjt:  KIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKG------------RPSDNASER-----------------------------LVMVVQWSPVVVL--

Query:  ----------------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRL
                        ++E+F+  +MEEG KISDHLS LNGI+SELE I V+I+DEDKALRLI SLP+S EHM+ +LMY KE ++F++VTSKL+ EERRL
Subjt:  ----------------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRL

Query:  KS-EGRTSQEDSVLVASNWKKKKDSVQKKGCWECG
        K+ E ++S+  ++ V  N KK K S +K  CW CG
Subjt:  KS-EGRTSQEDSVLVASNWKKKKDSVQKKGCWECG

A0A6J1CG82 uncharacterized protein LOC1110105212.1e-6057.83Show/hide
Query:  MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERL-----------------------------------------------
        MS FMSPVKIDVEKFDGM+NFGLWQVQVKDVLIQS LHKALKGRPS+ ASE+L                                               
Subjt:  MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERL-----------------------------------------------

Query:  -------VMVVQWSPVVVL-----------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSF
                    W  +  L           ++EQF+T +MEEGMKISDHLS LN II ELE IEVKI+DEDKALRLILSLP S EHM+PILMY K+TL+F
Subjt:  -------VMVVQWSPVVVL-----------VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSF

Query:  ADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKG-CWECG
        A+VTSKLL EERRLKSEGRTS EDS LV SNWKKKKDSVQKK  CW CG
Subjt:  ADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKG-CWECG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1631.44Show/hide
Query:  MSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKAL----------KGRPSDNASERLVMVVQ--------------------WSPVVVL---------
        MS VK +V KF+G   F  WQ +++D+LIQ  LHK L          K     +  ER    ++                    W+ +  L         
Subjt:  MSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKAL----------KGRPSDNASERLVMVVQ--------------------WSPVVVL---------

Query:  --VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQ
          +++Q Y   M EG     HL+V NG+I++L  + VKIE+EDKA+ L+ SLP+S +++   +++ K T+   DVTS LLL E+  K      Q
Subjt:  --VEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALRLILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCTTTATGAGTCCAGTGAAGATTGATGTGGAGAAATTTGATGGAATGATGAACTTCGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTTGGTT
ACACAAGGCTTTGAAGGGAAGACCAAGCGATAATGCTTCCGAAAGATTGGTAATGGTGGTCCAGTGGAGTCCAGTGGTGGTTCTTGTAGAGGAGCAGTTTTACACGCAGC
GAATGGAGGAAGGTATGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCATCATTTCAGAGTTGGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTTAGG
CTTATCTTGTCACTTCCAACTTCTTCTGAACACATGAGGCCAATCTTAATGTACAAGAAAGAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATTAGAGGAAAG
AAGGCTGAAGAGTGAAGGGCGTACTTCACAGGAGGATTCAGTGTTAGTAGCTAGCAATTGGAAGAAAAAGAAAGATTCCGTGCAGAAGAAAGGTTGTTGGGAATGCGGAT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCTTTATGAGTCCAGTGAAGATTGATGTGGAGAAATTTGATGGAATGATGAACTTCGGCTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTTGGTT
ACACAAGGCTTTGAAGGGAAGACCAAGCGATAATGCTTCCGAAAGATTGGTAATGGTGGTCCAGTGGAGTCCAGTGGTGGTTCTTGTAGAGGAGCAGTTTTACACGCAGC
GAATGGAGGAAGGTATGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCATCATTTCAGAGTTGGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTTAGG
CTTATCTTGTCACTTCCAACTTCTTCTGAACACATGAGGCCAATCTTAATGTACAAGAAAGAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATTAGAGGAAAG
AAGGCTGAAGAGTGAAGGGCGTACTTCACAGGAGGATTCAGTGTTAGTAGCTAGCAATTGGAAGAAAAAGAAAGATTCCGTGCAGAAGAAAGGTTGTTGGGAATGCGGAT
AG
Protein sequenceShow/hide protein sequence
MSSFMSPVKIDVEKFDGMMNFGLWQVQVKDVLIQSWLHKALKGRPSDNASERLVMVVQWSPVVVLVEEQFYTQRMEEGMKISDHLSVLNGIISELEVIEVKIEDEDKALR
LILSLPTSSEHMRPILMYKKETLSFADVTSKLLLEERRLKSEGRTSQEDSVLVASNWKKKKDSVQKKGCWECG