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Lag0015501 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015501
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:14491680..14492021
RNA-Seq ExpressionLag0015501
SyntenyLag0015501
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW15726.1 putative ribonuclease H protein [Vitis vinifera]6.0e-2851.89Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        VNW+FLD +LE+KGF  +WRSW++GCL + +++IL+NG  +G + A+RGLR+GDPLSPFLFT+V D +S+ +    E+  L G+ +G+ +  VS LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFA
        DT++FA
Subjt:  DTLIFA

RVW46685.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.0e-2850.94Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        V+W+FLD +LE+KGFG +WR W++GCL + +F++L+NG  +G + ASRGLR+GDPLSPFLFT+V D +S+ +    E+  L G+++G+ ++ VS LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFA
        DT+ F+
Subjt:  DTLIFA

RVW91328.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.0e-2851.89Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        VNW+FLD +LE+KGF  +WRSW++GCL + +++IL+NG  +G + A+RGLR+GDPLSPFLFT+V D +S+ +    E+  L G+ +G+ +  VS LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFA
        DT++FA
Subjt:  DTLIFA

RVX14115.1 Protein SWEETIE [Vitis vinifera]2.7e-2851.89Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        V+W+FLD +LE+KGFG +WR W++GCL + +F++L+NG  +G + ASRGLR+GDPLSPFLFT+V D +S+ +    EK  L G+++G+ ++ VS LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFA
        DT+ F+
Subjt:  DTLIFA

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]8.1e-3359.43Show/hide
Query:  MVNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYA
        MV+W FLD +L  KGFG +WR WIKGC+ + NFS+ INGR RGKI A+RGLR+GDPLSPFLFTL+GD+ S+ V++C E++ ++G+ +G+++ +VS L+YA
Subjt:  MVNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYA

Query:  DDTLIF
        DDT+IF
Subjt:  DDTLIF

TrEMBL top hitse value%identityAlignment
A0A438JYU3 Protein SWEETIE1.3e-2851.89Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        V+W+FLD +LE+KGFG +WR W++GCL + +F++L+NG  +G + ASRGLR+GDPLSPFLFT+V D +S+ +    EK  L G+++G+ ++ VS LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFA
        DT+ F+
Subjt:  DTLIFA

A0A6J1E196 uncharacterized protein LOC1110250193.9e-3359.43Show/hide
Query:  MVNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYA
        MV+W FLD +L  KGFG +WR WIKGC+ + NFS+ INGR RGKI A+RGLR+GDPLSPFLFTL+GD+ S+ V++C E++ ++G+ +G+++ +VS L+YA
Subjt:  MVNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYA

Query:  DDTLIF
        DDT+IF
Subjt:  DDTLIF

A0A803P8A0 Uncharacterized protein1.7e-2854.21Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        V+W FLD +L  KGFG +WR WI+GC+ +T+FSI +NGR+RGK   SRGLR+GDPLSPFLFTLV D + + V   +E +   G++IG+    +S LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFAR
        DTL F +
Subjt:  DTLIFAR

A0A803QEA6 Uncharacterized protein5.9e-2955.14Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        V+W FLD +L  KGFG +WR WI+GC+ +T+FSI INGR+RGK   SRGLR+GDPLSPFLFT++ D + + V   IE ++L G++IG+    +S LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFAR
        DTL F +
Subjt:  DTLIFAR

A5C9Z3 Reverse transcriptase domain-containing protein2.9e-2853.27Show/hide
Query:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD
        V+W FLD +L+ KGF  KWRSWI+GCL +++F+IL+NG  +G + ASRGLR+GDPLSPFLFTLV D +S+ +    E     G+ +G+ ++ VS+LQ+AD
Subjt:  VNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYAD

Query:  DTLIFAR
        DT+IF++
Subjt:  DTLIFAR

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein4.7e-0728.71Show/hide
Query:  FLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDTLI
        F+  +LE  G    + + IK        +I +NG     I    G R+G PLSP+LF +V + +++++    ++K ++G +IG+++  +S+L  ADD ++
Subjt:  FLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDTLI

Query:  F
        +
Subjt:  F

P92555 Uncharacterized mitochondrial protein AtMg012504.7e-0739.71Show/hide
Query:  LINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDT
        +ING  +G +  SRGLR+GDPLSP+LF L  + +S       E+  L G  +      ++ L +ADDT
Subjt:  LINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDT

Q03274 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)3.3e-0533.33Show/hide
Query:  LELKGFGHKWRSWIKGCLYNTNFSILIN-GRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDTLI
        L+  G      ++I G L ++  +I +  G    KI   RG+++GDPLSPFLF  V D +  S    ++     G  IG++K  + +L +ADD L+
Subjt:  LELKGFGHKWRSWIKGCLYNTNFSILIN-GRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDTLI

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)3.3e-0839.71Show/hide
Query:  LINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDT
        +ING  +G +  SRGLR+GDPLSP+LF L  + +S       E+  L G  +      ++ L +ADDT
Subjt:  LINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAATTGGGAGTTCCTTGATGGGATCCTTGAGTTGAAAGGTTTTGGCCATAAATGGCGATCGTGGATCAAAGGTTGCCTCTATAATACCAATTTCTCTATCCTCAT
CAACGGGAGACTAAGGGGCAAGATCATGGCCTCTAGAGGTTTAAGACGAGGGGATCCTCTCTCCCCGTTCTTGTTTACGCTTGTGGGAGATGCTATTAGTAAATCAGTGC
ATTATTGCATAGAAAAGAAGACCCTGCGAGGATGGGAGATTGGGCAACAAAAGTCTATTGTTTCTATTTTACAATATGCGGATGACACCCTCATTTTTGCCCGGATAATG
AGGATGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAATTGGGAGTTCCTTGATGGGATCCTTGAGTTGAAAGGTTTTGGCCATAAATGGCGATCGTGGATCAAAGGTTGCCTCTATAATACCAATTTCTCTATCCTCAT
CAACGGGAGACTAAGGGGCAAGATCATGGCCTCTAGAGGTTTAAGACGAGGGGATCCTCTCTCCCCGTTCTTGTTTACGCTTGTGGGAGATGCTATTAGTAAATCAGTGC
ATTATTGCATAGAAAAGAAGACCCTGCGAGGATGGGAGATTGGGCAACAAAAGTCTATTGTTTCTATTTTACAATATGCGGATGACACCCTCATTTTTGCCCGGATAATG
AGGATGATGTGA
Protein sequenceShow/hide protein sequence
MVNWEFLDGILELKGFGHKWRSWIKGCLYNTNFSILINGRLRGKIMASRGLRRGDPLSPFLFTLVGDAISKSVHYCIEKKTLRGWEIGQQKSIVSILQYADDTLIFARIM
RMM