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Lag0015514 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015514
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr12:14932529..14935137
RNA-Seq ExpressionLag0015514
SyntenyLag0015514
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]1.4e-2262.37Show/hide
Query:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG
        QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+   +IQVTP LE  V ILK+QY  I EMMGP CSG
Subjt:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG

KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.8e-2362.5Show/hide
Query:  KARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG
        +A KH WT +E+E LV+CLLQLV+ GGW+ DN TF+SGYL QV KLMKEK+P  +IQVTP LE +V ILK+QY  I +MMGP C+  G
Subjt:  KARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-2364.89Show/hide
Query:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG
        M S+  KA KH WT + DEVLV+CLLQLV+ GGW+ADN TF+ GYL QV KLMKEK+   +IQVTP L+ +V ILK+QY AI EMMGP CSG G
Subjt:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2259.57Show/hide
Query:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG
        M S+  KA KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR +IQVT  LE +V  LK+QY AI +MMGP CS  G
Subjt:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.4e-2262.37Show/hide
Query:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG
        QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+   +IQVTP LE  V ILK+QY  I EMMGP CSG
Subjt:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein6.7e-2362.37Show/hide
Query:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG
        QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+   +IQVTP LE  V ILK+QY  I EMMGP CSG
Subjt:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG

A0A5A7TF70 Putative nuclease HARBI11.3e-2362.5Show/hide
Query:  KARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG
        +A KH WT +E+E LV+CLLQLV+ GGW+ DN TF+SGYL QV KLMKEK+P  +IQVTP LE +V ILK+QY  I +MMGP C+  G
Subjt:  KARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG

A0A5A7U7F7 Retrotransposon protein1.3e-2364.89Show/hide
Query:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG
        M S+  KA KH WT + DEVLV+CLLQLV+ GGW+ADN TF+ GYL QV KLMKEK+   +IQVTP L+ +V ILK+QY AI EMMGP CSG G
Subjt:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG

A0A5D3BC95 Retrotransposon protein8.7e-2359.57Show/hide
Query:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG
        M S+  KA KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR +IQVT  LE +V  LK+QY AI +MMGP CS  G
Subjt:  MVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLG

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein6.7e-2362.37Show/hide
Query:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG
        QM S   K  KH WT +EDE LV+CLLQLV+ G W+ DN TF+ GYL QV KLMKEK+   +IQVTP LE  V ILK+QY  I EMMGP CSG
Subjt:  QMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGCAAATGGTATCATCCACTTTGAAAGCCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGTTTGTTACAGTTAGTTCAAGTAGGTGG
TTGGAAGGCTGACAACATGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGT
ACAAAGTGACGATCCTAAAAAGGCAATATGATGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAAT
CAGTCTTTGATGATTGGGTCAAGGGCTAATGAAGGTGTTTTGACTTCAAAAGAAGTGGCTACCGATCTGGATAAGTGTGCTGCATGTTTTTCCTCCGCCGCCGCCGCCGC
AGCTCCTCCGCCGCTGCCGCCGACCTCCGCACTTGCTGTTCGCCACGCCGCCCCTGCGCATCGCCGCCCGCCGCTCGCCTCCCGTCGCCGTGAACTGCCGCAGCCGTTGT
GTCCAGATCTGTTTGTTCTTCGTCGCTCGGATCTGATTACCGCCGTCACTGCCTTAAGACAAATAGCCACACGTCTCTTGTGCGTTCGACGATTTCAGTTAGTGGCTTCC
GATTTCAAGGTGCCCGTGGTGTTTGGAGGCCGAATTATCGAATTTGAGCGATTTGGGACTGTTGGACAGCAAGCTGTGGTTCTGTTTGGGAATATGGATGTTGTGTGCTT
GTGCTATGTAATGGGTGGAAAGTGTTGGACTGTTATACATTATGTGTTGTCTGGTATTGTTAGTGAACGGCGAGGAGTTGTGTTTTATCTCTGTTTAGGAGTGTTGTTGC
CGCCTTCGTTTCTTGTTCTTGAGGTTGTTGGAGTTGTGAATGGTTTGTGTATGCGAGGTCTGACTCGTTATGGTTATAGGAGTGTATATTCTTATTTTCAGGTAGAGGTA
AAGGTGTACAGCACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGCAAATGGTATCATCCACTTTGAAAGCCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGTTTGTTACAGTTAGTTCAAGTAGGTGG
TTGGAAGGCTGACAACATGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGT
ACAAAGTGACGATCCTAAAAAGGCAATATGATGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCAGAGAAAT
CAGTCTTTGATGATTGGGTCAAGGGCTAATGAAGGTGTTTTGACTTCAAAAGAAGTGGCTACCGATCTGGATAAGTGTGCTGCATGTTTTTCCTCCGCCGCCGCCGCCGC
AGCTCCTCCGCCGCTGCCGCCGACCTCCGCACTTGCTGTTCGCCACGCCGCCCCTGCGCATCGCCGCCCGCCGCTCGCCTCCCGTCGCCGTGAACTGCCGCAGCCGTTGT
GTCCAGATCTGTTTGTTCTTCGTCGCTCGGATCTGATTACCGCCGTCACTGCCTTAAGACAAATAGCCACACGTCTCTTGTGCGTTCGACGATTTCAGTTAGTGGCTTCC
GATTTCAAGGTGCCCGTGGTGTTTGGAGGCCGAATTATCGAATTTGAGCGATTTGGGACTGTTGGACAGCAAGCTGTGGTTCTGTTTGGGAATATGGATGTTGTGTGCTT
GTGCTATGTAATGGGTGGAAAGTGTTGGACTGTTATACATTATGTGTTGTCTGGTATTGTTAGTGAACGGCGAGGAGTTGTGTTTTATCTCTGTTTAGGAGTGTTGTTGC
CGCCTTCGTTTCTTGTTCTTGAGGTTGTTGGAGTTGTGAATGGTTTGTGTATGCGAGGTCTGACTCGTTATGGTTATAGGAGTGTATATTCTTATTTTCAGGTAGAGGTA
AAGGTGTACAGCACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG
Protein sequenceShow/hide protein sequence
MLMQMVSSTLKARKHIWTPMEDEVLVQCLLQLVQVGGWKADNMTFRSGYLQQVLKLMKEKLPRCDIQVTPTLEYKVTILKRQYDAIVEMMGPTCSGLGGMMSESALRQRN
QSLMIGSRANEGVLTSKEVATDLDKCAACFSSAAAAAAPPPLPPTSALAVRHAAPAHRRPPLASRRRELPQPLCPDLFVLRRSDLITAVTALRQIATRLLCVRRFQLVAS
DFKVPVVFGGRIIEFERFGTVGQQAVVLFGNMDVVCLCYVMGGKCWTVIHYVLSGIVSERRGVVFYLCLGVLLPPSFLVLEVVGVVNGLCMRGLTRYGYRSVYSYFQVEV
KVYSTRDGELLSHGSPLG