CuGenDBv2

Gene ID	Lag0015516
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr12:14994778..14995578
RNA-Seq Expression	Lag0015516
Synteny	Lag0015516
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.3e-52

44.87

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+ +I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N
        +KE+FFG+KMD SK LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYG D +T+  VL++++ R+LE+K+E+K+ + L  +G +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK   FR     SK  G S+                     KC  CHK GH K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]

6.3e-52

43.13

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++ +S+I+L+L D VLR V + T + ELW KLE LYM K+L+N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNK
        +KE+FFG+KMD SK LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R+LE+K+E+K+ + L  +   
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNK

Query:  KQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
                     + S+ K     +R +R  S+ ++          KC  CHK GH K +CP
Subjt:  KQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.0e-55

45.63

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N
        +KE+FFG+KMD SK+LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R+LE+K+E+K+ + L  +G +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK   FR     SK  G S+                     KC  CHK GH K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.1e-51

42.97

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S R ++ K++G GDF LW+ KI A L+Q KVAK +LD  +LP  + ES++ +M+++ +S+I+L+L D VLR V + T + ELW KLE LY+ K+L+N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFV-KGN
        +KE+FFG+KMD SK+LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R+LE+K+E K+ + L   + +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFV-KGN

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK      ++S+SK  G S+                     KC  CHK GH+K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.0e-55

45.63

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N
        +KE+FFG+KMD SK+LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R+LE+K+E+K+ + L  +G +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK   FR     SK  G S+                     KC  CHK GH K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

6.2e-53

44.87

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+ +I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N
        +KE+FFG+KMD SK LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYG D +T+  VL++++ R+LE+K+E+K+ + L  +G +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK   FR     SK  G S+                     KC  CHK GH K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

A0A5A7U459 Putative polyprotein

3.1e-52

43.13

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++ +S+I+L+L D VLR V + T + ELW KLE LYM K+L+N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNK
        +KE+FFG+KMD SK LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R+LE+K+E+K+ + L  +   
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNK

Query:  KQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
                     + S+ K     +R +R  S+ ++          KC  CHK GH K +CP
Subjt:  KQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

A0A5A7UB25 Putative gag-pol polyprotein

3.9e-55

45.63

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N
        +KE+FFG+KMD SK+LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R+LE+K+E+K+ + L  +G +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK   FR     SK  G S+                     KC  CHK GH K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-51

42.97

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S R ++ K++G GDF LW+ KI A L+Q KVAK +LD  +LP  + ES++ +M+++ +S+I+L+L D VLR V + T + ELW KLE LY+ K+L+N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFV-KGN
        +KE+FFG+KMD SK+LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD + +  +L++++ R+LE+K+E K+ + L   + +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFV-KGN

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK      ++S+SK  G S+                     KC  CHK GH+K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

A0A5D3DNU1 Putative gag-pol polyprotein

3.9e-55

45.63

Show/hide

Query:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY
        S RF++ K++G GDF LW+ KI A LVQ KVAK +LD  +LP  + ES++ +M+++A+S+I+L+L D VLR V + T   ELW KLE LY+ K+L N +Y
Subjt:  SARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILY

Query:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N
        +KE+FFG+KMD SK+LEEN+++F  I  DL N GE++ D++QAVILLNSLP+ ++EV  A+KYGRD +T+  VL++++ R+LE+K+E+K+ + L  +G +
Subjt:  LKERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKG-N

Query:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
        +K+  +GK   FR     SK  G S+                     KC  CHK GH K +CP
Subjt:  KKQQHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.4e-30

30.77

Show/hide

Query:  RFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLK
        ++++ K++G   F  W+ ++   L+QQ + K L   SK P T+   D  ++++ A S+I LHL D V+  +      R +W++LE LYM KTLTN LYLK
Subjt:  RFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLK

Query:  ERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNKKQ
        ++ +   M    N   ++  FN + T L N G +++++D+A++LLNSLP ++  +   + +G+  I L+ V +++ L +   K+ + + +AL  +G    
Subjt:  ERFFGFKMDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNKKQ

Query:  QHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP
          RG+++  R  N+  +     +  NR  SR +N           C  C++ GH K DCP
Subjt:  QHRGKNHPFRGQNSQSKGHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTGCTAGATTTGATCTTGAAAAGTATGACGGTAGAGGCGATTTTGGTTTATGGAAGACAAAAATATCAGCATTTCTGGTACAACAAAAAGTTGCTAAGGCTTTGCT
TGATCCTAGTAAACTCCCTGTGACTTTGTTTGAATCCGATAGGGAAGAAATGAATGACATTGCCTTTAGTTCTATCATTCTTCATCTAGGTGATAGTGTTTTAAGGAAAG
TTAGTAAGATAACCAACGTTAGAGAATTATGGTCTAAGCTGGAAGAATTGTATATGCCCAAGACCCTTACTAACATCCTTTATCTGAAAGAACGATTTTTTGGATTCAAA
ATGGATCCATCTAAAAATCTTGAGGAAAACATAGAAGACTTTAATGTCATTTGTACTGACTTGCAGAATTCTGGTGAAGAAGTCAAAGATAAGGATCAAGCAGTAATTCT
TCTAAATTCACTACCAAAAAACTTCAAAGAAGTGATGGTAGCAATGAAGTATGGTAGAGATGATATCACTCTTGAAAAAGTACTGAATTCTGTAAGGCTTAGGGACTTGG
AAATGAAACAAGAGAAGAAAGAACCCAAAGCCTTATTTGTTAAAGGAAATAAAAAACAACAACATAGAGGGAAAAACCACCCGTTTAGAGGCCAAAACTCTCAGTCCAAA
GGACATGGCAACTCGCAGAGGGATAACAGACAGAATTCTAGACCTCAGAATAATGGAAGAGAAAGTGATAAGAGTGACATTAAGTGTAACTACTGTCACAAAACCGGGCA
CATTAAATGGGACTGTCCACAACTGAAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSARFDLEKYDGRGDFGLWKTKISAFLVQQKVAKALLDPSKLPVTLFESDREEMNDIAFSSIILHLGDSVLRKVSKITNVRELWSKLEELYMPKTLTNILYLKERFFGFK
MDPSKNLEENIEDFNVICTDLQNSGEEVKDKDQAVILLNSLPKNFKEVMVAMKYGRDDITLEKVLNSVRLRDLEMKQEKKEPKALFVKGNKKQQHRGKNHPFRGQNSQSK
GHGNSQRDNRQNSRPQNNGRESDKSDIKCNYCHKTGHIKWDCPQLK

Lag0015516 (gene) of Sponge gourd (AG-4) v1 genome