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Lag0015518 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015518
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:15039588..15039908
RNA-Seq ExpressionLag0015518
SyntenyLag0015518
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065961.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.2e-0738.68Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        MT  + SSK + +S+ +  P+T SRSK    +  Q  VIA  +L+++ E ++ EI   EN +   F  PS +  + +  DVMSVMM +V T E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN+L
Subjt:  KKINML

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.2e-0639.62Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK +A+S+ + GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   +   S +  K +  DVMSVMM DV   E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN+L
Subjt:  KKINML

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.2e-0639.62Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK +A+S+ + GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   +   S +  K +  DVMSVMM DV   E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN+L
Subjt:  KKINML

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.2e-0639.62Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK +A+S+ + GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   +   S +  K +  DVMSVMM DV   E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN+L
Subjt:  KKINML

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.2e-0639.62Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK +A+S+ + GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   +   S +  K +  DVMSVMM DV   E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN+L
Subjt:  KKINML

TrEMBL top hitse value%identityAlignment
A0A5A7VB81 Retrotransposon gag protein1.7e-0638.1Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK + +S+ ++GPITR+ SK    E  Q  VIA  +L+++ ES++  I   ENL+   +   S +L   +  DV+ VMM DV T E  + K+E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINM
        +KIN+
Subjt:  KKINM

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein7.8e-0737.74Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK + +S+ ++GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN +       S +  K +  DVMSVMM D+ T E  M  +E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +K+N L
Subjt:  KKINML

A0A5A7VJT9 Ty3-gypsy retrotransposon protein3.5e-0738.68Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        MT  + SSK + +S+ +  P+T SRSK    +  Q  VIA  +L+++ E ++ EI   EN +   F  PS +  + +  DVMSVMM +V T E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN+L
Subjt:  KKINML

A0A5D3BY54 Ty3-gypsy retrotransposon protein7.8e-0738.68Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+S  + +SN + GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN +       S +  K +  DVMSVMM D+ T E  M ++E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINML
        +KIN L
Subjt:  KKINML

A0A5D3E029 Retrotransposon gag protein1.7e-0638.1Show/hide
Query:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE
        M  ++A+SK + +S+ ++GPITR+ SK    E  Q  VIA  +L+++ ES++  I   ENL+   +   S +L   +  DV+ VMM DV T E  + K+E
Subjt:  MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVE

Query:  KKINM
        +KIN+
Subjt:  KKINM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTCGAAGAAGCTTCTTCAAAGATTGCTGCTTCAAGCAACTTCTTTGTGGGGCCAATTACTCGCAGTCGCTCTAAGGAAACCCAACACGAAGACAGCCAAACTCC
TGTCATTGCAAACAAGATGTTGAGACGCATGACAGAATCTACTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGAAAATTCATCTTTCCTTCTCAGCAACTAA
ACAAAACATCCAGTTCTGATGTGATGTCTGTTATGATGACTGATGTAGGAACTAGTGAAGAACGAATGACTAAAGTTGAGAAGAAAATCAACATGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTTCGAAGAAGCTTCTTCAAAGATTGCTGCTTCAAGCAACTTCTTTGTGGGGCCAATTACTCGCAGTCGCTCTAAGGAAACCCAACACGAAGACAGCCAAACTCC
TGTCATTGCAAACAAGATGTTGAGACGCATGACAGAATCTACTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGAAAATTCATCTTTCCTTCTCAGCAACTAA
ACAAAACATCCAGTTCTGATGTGATGTCTGTTATGATGACTGATGTAGGAACTAGTGAAGAACGAATGACTAAAGTTGAGAAGAAAATCAACATGTTATGA
Protein sequenceShow/hide protein sequence
MTFEEASSKIAASSNFFVGPITRSRSKETQHEDSQTPVIANKMLRRMTESTQLEIATAENLMLGKFIFPSQQLNKTSSSDVMSVMMTDVGTSEERMTKVEKKINML