; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015534 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015534
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:15411618..15412907
RNA-Seq ExpressionLag0015534
SyntenyLag0015534
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-2760Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +S+   EEENQC  ST TR SAF+ LS+STSKK +PSTS FDRLK+ NDQ +R+M +L+VK F E N D K+ S +PSRMKRK SV INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G ++  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-2760Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC  ST  R SAF+ LS+STSKK +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G ++  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2759.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC MST TR SAF+ LS+S SKK +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSR+KRK S+ INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKAF
        II TNP ++G ++  DE+K F
Subjt:  IILTNPTSQGSDQDHDEDKAF
KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.2e-2759.17Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC M T  + SAF+ LS+STS K +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G +Q  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]7.0e-2759.17Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC  ST  R SAF+ LS+STSKK +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INT+GSL VKP L
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G ++  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein2.0e-2760Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +S+   EEENQC  ST TR SAF+ LS+STSKK +PSTS FDRLK+ NDQ +R+M +L+VK F E N D K+ S +PSRMKRK SV INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G ++  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
A0A5A7TQ06 Retrotransposon gag protein1.5e-2760Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC  ST  R SAF+ LS+STSKK +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G ++  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
A0A5A7U974 Retrotransposon gag protein6.9e-2859.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC MST TR SAF+ LS+S SKK +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSR+KRK S+ INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKAF
        II TNP ++G ++  DE+K F
Subjt:  IILTNPTSQGSDQDHDEDKAF
A0A5A7VRG7 Retrotransposon gag protein4.4e-2759.17Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC M T  + SAF+ LS+STS K +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G +Q  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
A0A5D3D5Q0 Gag protease polyprotein3.4e-2759.17Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL
        +SM   EEENQC  ST  R SAF+ LS+STSKK +PSTS FDRLK+TNDQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INT+GSL VKP L
Subjt:  MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPTSQGSDQDHDEDKA
        II TNP ++G ++  DE+K+
Subjt:  IILTNPTSQGSDQDHDEDKA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAATGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGA
TCTGATCAAGATCACGATGAAGATAAGGCTTTTAAAATCGAATGGAAGTTGCTTCCTCCAATTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGA
AGGTTCTCACGCGTTTCACTGCAGTTCTTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCCACCCCAAGTTCGAAGGTTCTCATGTCGCTTCGCTG
AGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTCTGCAATT
CCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTC
ACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTGCGCTGCAGTTCCTTCCTCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCTTTCCT
CCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACGCG
CTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAATGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGA
TCTGATCAAGATCACGATGAAGATAAGGCTTTTAAAATCGAATGGAAGTTGCTTCCTCCAATTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGA
AGGTTCTCACGCGTTTCACTGCAGTTCTTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCCACCCCAAGTTCGAAGGTTCTCATGTCGCTTCGCTG
AGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTCTGCAATT
CCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTC
ACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTGCGCTGCAGTTCCTTCCTCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCTTTCCT
CCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACGCG
CTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAG
Protein sequenceShow/hide protein sequence
MSMVATEEENQCSMSTSTRPSAFQMLSVSTSKKSQPSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQG
SDQDHDEDKAFKIEWKLLPPIRRFSRRFAAVPSSKFEGSHAFHCSSFLTVRRFSRASLQFLPPQVRRFSCRFAEFLPPSLKVLTSLRFAHALRCVPSSKFEGSHTLRSAI
PSPKFEGSHALRAVPSSKFEGSHAFRCISFPQIRRFSRASLQFLPQSSKVLTRCAAVPSSSSKVLTRFVAVLSSKFEGSHALRCSSFPPSSKVLTRFAAVPFSKFEGSHA
LRCSSFLTIRRFSRASL