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Lag0015538 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015538
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiondual-specificity RNA methyltransferase RlmN
Genome locationchr12:15537183..15537523
RNA-Seq ExpressionLag0015538
SyntenyLag0015538
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571920.1 hypothetical protein SDJN03_28648, partial [Cucurbita argyrosperma subsp. sororia]7.0e-0568.89Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ
        MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ

KAG7011606.1 rlmN1 [Cucurbita argyrosperma subsp. argyrosperma]7.0e-0568.89Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ
        MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ

XP_022972434.1 uncharacterized protein LOC111470995 [Cucurbita maxima]7.0e-0568.89Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ
        MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ

XP_023553823.1 uncharacterized protein LOC111811282 [Cucurbita pepo subsp. pepo]7.0e-0568.89Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ
        MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ

XP_038888929.1 dual-specificity RNA methyltransferase RlmN [Benincasa hispida]1.6e-0472.22Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDH
        MAAFRSAFD GE RTEF+KAG+K+TFIPF   +W H
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDH

TrEMBL top hitse value%identityAlignment
A0A0A0K4F5 Radical_SAM domain-containing protein1.7e-0472.22Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDH
        MA FRSAFD GE RTEF+KAGIK+TFIPF   +W H
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDH

A0A1S3C167 dual-specificity RNA methyltransferase RlmN9.8e-0559.18Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQIGHS
        MA FRSAFD GE RTEF+KAGIK+TFIPF   +W H L   + N   H+
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQIGHS

A0A5D3C8Y4 Dual-specificity RNA methyltransferase RlmN9.8e-0559.18Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQIGHS
        MA FRSAFD GE RTEF+KAGIK+TFIPF   +W H L   + N   H+
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQIGHS

A0A6J1GM04 uncharacterized protein LOC1114555932.2e-0466.67Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ
        MAAFRSAFD GE RTEF+KAGIKSTFIP       HD   + LNQ
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ

A0A6J1IBJ2 uncharacterized protein LOC1114709953.4e-0568.89Show/hide
Query:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ
        MAAFRSAFD GE RTEF+KAGIKSTFIPF      HD   + LNQ
Subjt:  MAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGCAATGGCTCAACTGCTGCCACTCCCAACAAGAAGAAGCGAGTGGCGGAGCAATGGCAGCGTTTCGATCTGCATTCGATGTCGGAGAGACGAGAACTGAGTT
CAAGAAGGCTGGCATCAAATCCACCTTCATCCCCTTCGCAACCACTTTGTGGGATCATGATCTCCAAGGCTCTTCTCTAAACCAAATCGGCCATTCCCACTGCCACCATC
GCTGTCGTGGGACTTCTCTTCAGGTGGGATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGCAATGGCTCAACTGCTGCCACTCCCAACAAGAAGAAGCGAGTGGCGGAGCAATGGCAGCGTTTCGATCTGCATTCGATGTCGGAGAGACGAGAACTGAGTT
CAAGAAGGCTGGCATCAAATCCACCTTCATCCCCTTCGCAACCACTTTGTGGGATCATGATCTCCAAGGCTCTTCTCTAAACCAAATCGGCCATTCCCACTGCCACCATC
GCTGTCGTGGGACTTCTCTTCAGGTGGGATCATGA
Protein sequenceShow/hide protein sequence
MAEQWLNCCHSQQEEASGGAMAAFRSAFDVGETRTEFKKAGIKSTFIPFATTLWDHDLQGSSLNQIGHSHCHHRCRGTSLQVGS