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Lag0015545 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015545
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:15730674..15731141
RNA-Seq ExpressionLag0015545
SyntenyLag0015545
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX56550.1 ribonuclease H, partial [Trifolium pratense]1.4e-0634.21Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        L+W+ P   +WK NVDAS+ +     G GW IR+S G  + AG   N  + K AI   E  AI+E ++  T+ G          +V E DS  VV A+ +
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFEDQLELSFVFVA
        +     ELS + ++
Subjt:  DFEDQLELSFVFVA

RLN22769.1 hypothetical protein C2845_PM07G31160 [Panicum miliaceum]6.2e-0733.65Show/hide
Query:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSD
        +W PP P+ WK+NVDA+ + +E  G  G+ IRD  GS++ AG  +   +      C E    IE L+   +HG  +       ++++ DS  +V+AL SD
Subjt:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSD

Query:  FEDQ
          D+
Subjt:  FEDQ

VDD35472.1 unnamed protein product, partial [Brassica oleracea]9.5e-0835.92Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        ++W PP   Y K N DA+W K E  GG GW +RD  G LI AG KK  +++  AI+  E  A+   L+  T  G  +       + +E DS +++R +N 
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFE
        + E
Subjt:  DFE

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.3e-0936.54Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        ++W  P  N WKLN DASW +   VGG+GW + D  G ++ AG  K ++ K+  I  LE+  II GL+       F   + + P+ +E DS EV+R +  
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFED
        +  D
Subjt:  DFED

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-1139.64Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        L+WEPP  + W LN DASW      GG+GW IR  +G ++ AG +  +      +K LE  AI+EGL++ TN G  +      PL +E DS EV   LN 
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFEDQLELSFV
          ED  +  +V
Subjt:  DFEDQLELSFV

TrEMBL top hitse value%identityAlignment
A0A2K3JR95 Ribonuclease H (Fragment)6.6e-0734.21Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        L+W+ P   +WK NVDAS+ +     G GW IR+S G  + AG   N  + K AI   E  AI+E ++  T+ G          +V E DS  VV A+ +
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFEDQLELSFVFVA
        +     ELS + ++
Subjt:  DFEDQLELSFVFVA

A0A3L6SJJ2 RNase H domain-containing protein3.0e-0733.65Show/hide
Query:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSD
        +W PP P+ WK+NVDA+ + +E  G  G+ IRD  GS++ AG  +   +      C E    IE L+   +HG  +       ++++ DS  +V+AL SD
Subjt:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSD

Query:  FEDQ
          D+
Subjt:  FEDQ

A0A3P6ESY2 RNase H domain-containing protein (Fragment)4.6e-0835.92Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        ++W PP   Y K N DA+W K E  GG GW +RD  G LI AG KK  +++  AI+  E  A+   L+  T  G  +       + +E DS +++R +N 
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFE
        + E
Subjt:  DFE

A0A6J1CQG0 uncharacterized protein LOC1110132161.1e-0936.54Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        ++W  P  N WKLN DASW +   VGG+GW + D  G ++ AG  K ++ K+  I  LE+  II GL+       F   + + P+ +E DS EV+R +  
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFED
        +  D
Subjt:  DFED

A0A6J1DNV9 uncharacterized protein LOC1110224036.9e-1239.64Show/hide
Query:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS
        L+WEPP  + W LN DASW      GG+GW IR  +G ++ AG +  +      +K LE  AI+EGL++ TN G  +      PL +E DS EV   LN 
Subjt:  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNS

Query:  DFEDQLELSFV
          ED  +  +V
Subjt:  DFEDQLELSFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0430.26Show/hide
Query:  SHLQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHG
        +H +W  P+  + K N D S+   +     GW +RDSNGS + AG    +++   A++  E+ A+I  ++   +HG
Subjt:  SHLQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHG

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)2.1e-0541.67Show/hide
Query:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQ
        +W PP   Y K N D+ + +        W IRDSNG +I +GC K QQ
Subjt:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQ

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0542.55Show/hide
Query:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQ
        +W PP  +  K N DAS  +R  V G+GW +R+S G++I  G  K Q
Subjt:  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGCCCACCTGGAGAACCATCCGAGTCACCTTCAATGGGAGCCACCAGACCCAAATTATTGGAAGCTGAACGTCGATGCTTCATGGTTCAAAAGAGAATGTGT
CGGTGGAATGGGTTGGTTCATTCGTGACTCGAACGGGTCTCTAATCGGAGCGGGCTGCAAAAAAAATCAACAAATTAAAAAGTGGGCGATCAAATGCTTAGAAGTCGGAG
CCATTATTGAGGGCCTGAAGGATTACACTAACCATGGCGATTTCAAAGGAAGAAGATGCAAGTTACCCCTTGTCGTTGAATTTGACTCTACCGAAGTTGTTAGAGCTCTG
AATAGCGATTTCGAAGACCAATTGGAGCTGAGTTTCGTTTTTGTGGCCACTCCCTTCTTCGCGAGGAAGAAGGTGAAGTGTTTTGGAGGGAAGATCTTTTCCCCAGATGG
TTTCCTTGGTTTTACCCAAGGAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGCCCACCTGGAGAACCATCCGAGTCACCTTCAATGGGAGCCACCAGACCCAAATTATTGGAAGCTGAACGTCGATGCTTCATGGTTCAAAAGAGAATGTGT
CGGTGGAATGGGTTGGTTCATTCGTGACTCGAACGGGTCTCTAATCGGAGCGGGCTGCAAAAAAAATCAACAAATTAAAAAGTGGGCGATCAAATGCTTAGAAGTCGGAG
CCATTATTGAGGGCCTGAAGGATTACACTAACCATGGCGATTTCAAAGGAAGAAGATGCAAGTTACCCCTTGTCGTTGAATTTGACTCTACCGAAGTTGTTAGAGCTCTG
AATAGCGATTTCGAAGACCAATTGGAGCTGAGTTTCGTTTTTGTGGCCACTCCCTTCTTCGCGAGGAAGAAGGTGAAGTGTTTTGGAGGGAAGATCTTTTCCCCAGATGG
TTTCCTTGGTTTTACCCAAGGAAGTTAA
Protein sequenceShow/hide protein sequence
MEMAHLENHPSHLQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRAL
NSDFEDQLELSFVFVATPFFARKKVKCFGGKIFSPDGFLGFTQGS