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Lag0015550 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015550
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr12:15857103..15859484
RNA-Seq ExpressionLag0015550
SyntenyLag0015550
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015632995.1 uncharacterized protein LOC107280484 [Oryza sativa Japonica Group]4.4e-1028.44Show/hide
Query:  KTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR
        K  SS    ++ + FW+IW+ARN  K +   V+   ++  I   ++ +L +N  T      EN  + P W+  P+G W +NSDA  F   +  GVG +IR
Subjt:  KTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR

Query:  DYSGSLIGIGCKRMQRNWGIKNL-EAFAILEGVRAYLNWNTGFPEDLKLS-LLAESDASEVVRAIYGESTDLSELSLISSTTVDFGLGESF---SIAKCS
        D +G  + + C  M  +  +  L EA AI   +        G  ++  L  ++  SD   V+R I     D S +  +        L  +F   S    +
Subjt:  DYSGSLIGIGCKRMQRNWGIKNL-EAFAILEGVRAYLNWNTGFPEDLKLS-LLAESDASEVVRAIYGESTDLSELSLISSTTVDFGLGESF---SIAKCS

Query:  RLSNSEVHFVARARAIIT
        RLSN   H +AR   + T
Subjt:  RLSNSEVHFVARARAIIT

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.2e-1326.49Show/hide
Query:  MAKTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPP------------WRSPPSGSWKLNSDATW
        +    S EE+    +I W IW++RN+    G  ++   + R+I + +   +        +   +    + P            W +PP+  WKLN+DA+W
Subjt:  MAKTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPP------------WRSPPSGSWKLNSDATW

Query:  FEDRKVGGVGWVIRDYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLS
         E+R+VGG+GW++ D  G ++  G  +++    I  LE   I+ G++ ++N  +  P      +  ESD+ EV+R +  E  DL+
Subjt:  FEDRKVGGVGWVIRDYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.0e-1128.16Show/hide
Query:  IIFWNIWKARNQYKQSGLRVNLNNIIRAI----------AINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDY
        II W IW+ RN+    G+     +I  AI            N++    N ++       +N  +   W+ P S SWKLN++A W  D   GG+GW++RD 
Subjt:  IIFWNIWKARNQYKQSGLRVNLNNIIRAI----------AINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDY

Query:  SGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLSNSE
         G +I   C+ ++    I  LE  AI EG+RA         ++    +  ESD+ E +  ++ +  D +E+  L+          E  S+   SR +N  
Subjt:  SGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLSNSE

Query:  VHFVAR
         H +AR
Subjt:  VHFVAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-1227.83Show/hide
Query:  SSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYS--SPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRD
        S E+LD++ I  W IW  RN     G   + + +I+ +   + E    +E + S     + N+     W  PP   W LN+DA+W +    GG+GW+IR 
Subjt:  SSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYS--SPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRD

Query:  YSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELSLISSTTVDF-GLGESFSIAKCSRLSNS
        + G ++  G + ++    +K LEA AILEG+R   N     P      L  E+D++EV   +  +  DL++   +    ++     E  + AK  R +N 
Subjt:  YSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELSLISSTTVDF-GLGESFSIAKCSRLSNS

Query:  EVHFVARARAII
          H +A+  +++
Subjt:  EVHFVARARAII

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-1028.23Show/hide
Query:  IIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINN--EVTYSSPPMENQASH----------PPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR
        II W IW+ RN+    G    +++  R I + ++  +IN+    T       N+  H            W+ P S SWKLN+DA W  D   GG+GW++R
Subjt:  IIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINN--EVTYSSPPMENQASH----------PPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR

Query:  DYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWN-TGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLS
        D  G +I   C+ ++    I  LE  AI EG+RA    +     ++    +  ESD+ E +  ++ +  D +E+  L+          +  S+   SR +
Subjt:  DYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWN-TGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLS

Query:  NSEVHFVAR
        N   H +AR
Subjt:  NSEVHFVAR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.5e-1128.16Show/hide
Query:  IIFWNIWKARNQYKQSGLRVNLNNIIRAI----------AINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDY
        II W IW+ RN+    G+     +I  AI            N++    N ++       +N  +   W+ P S SWKLN++A W  D   GG+GW++RD 
Subjt:  IIFWNIWKARNQYKQSGLRVNLNNIIRAI----------AINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDY

Query:  SGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLSNSE
         G +I   C+ ++    I  LE  AI EG+RA         ++    +  ESD+ E +  ++ +  D +E+  L+          E  S+   SR +N  
Subjt:  SGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLSNSE

Query:  VHFVAR
         H +AR
Subjt:  VHFVAR

A0A6J1CQG0 uncharacterized protein LOC1110132163.5e-1326.49Show/hide
Query:  MAKTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPP------------WRSPPSGSWKLNSDATW
        +    S EE+    +I W IW++RN+    G  ++   + R+I + +   +        +   +    + P            W +PP+  WKLN+DA+W
Subjt:  MAKTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPP------------WRSPPSGSWKLNSDATW

Query:  FEDRKVGGVGWVIRDYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLS
         E+R+VGG+GW++ D  G ++  G  +++    I  LE   I+ G++ ++N  +  P      +  ESD+ EV+R +  E  DL+
Subjt:  FEDRKVGGVGWVIRDYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLS

A0A6J1DNV9 uncharacterized protein LOC1110224036.0e-1327.83Show/hide
Query:  SSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYS--SPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRD
        S E+LD++ I  W IW  RN     G   + + +I+ +   + E    +E + S     + N+     W  PP   W LN+DA+W +    GG+GW+IR 
Subjt:  SSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYS--SPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRD

Query:  YSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELSLISSTTVDF-GLGESFSIAKCSRLSNS
        + G ++  G + ++    +K LEA AILEG+R   N     P      L  E+D++EV   +  +  DL++   +    ++     E  + AK  R +N 
Subjt:  YSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELSLISSTTVDF-GLGESFSIAKCSRLSNS

Query:  EVHFVARARAII
          H +A+  +++
Subjt:  EVHFVARARAII

A0A6J1DSV1 uncharacterized protein LOC1110236085.6e-1128.23Show/hide
Query:  IIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINN--EVTYSSPPMENQASH----------PPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR
        II W IW+ RN+    G    +++  R I + ++  +IN+    T       N+  H            W+ P S SWKLN+DA W  D   GG+GW++R
Subjt:  IIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINN--EVTYSSPPMENQASH----------PPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR

Query:  DYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWN-TGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLS
        D  G +I   C+ ++    I  LE  AI EG+RA    +     ++    +  ESD+ E +  ++ +  D +E+  L+          +  S+   SR +
Subjt:  DYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWN-TGFPEDLKLSLLAESDASEVVRAIYGESTDLSELS-LISSTTVDFGLGESFSIAKCSRLS

Query:  NSEVHFVAR
        N   H +AR
Subjt:  NSEVHFVAR

B8AP27 F-box domain-containing protein2.1e-1028.44Show/hide
Query:  KTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR
        K  SS    ++ + FW+IW+ARN  K +   V+   ++  I   ++ +L +N  T      EN  + P W+  P+G W +NSDA  F   +  GVG +IR
Subjt:  KTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIR

Query:  DYSGSLIGIGCKRMQRNWGIKNL-EAFAILEGVRAYLNWNTGFPEDLKLS-LLAESDASEVVRAIYGESTDLSELSLISSTTVDFGLGESF---SIAKCS
        D +G  + + C  M  +  +  L EA AI   +        G  ++  L  ++  SD   V+R I     D S +  +        L  +F   S    +
Subjt:  DYSGSLIGIGCKRMQRNWGIKNL-EAFAILEGVRAYLNWNTGFPEDLKLS-LLAESDASEVVRAIYGESTDLSELSLISSTTVDFGLGESF---SIAKCS

Query:  RLSNSEVHFVARARAIIT
        RLSN   H +AR   + T
Subjt:  RLSNSEVHFVARARAIIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-1126.11Show/hide
Query:  DIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEV--TYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSL
        ++V  + W +WK+RN+    G   +   ++R    + EE     E+    S P +E   S   W++PP    K N+DATW  +    G+GW++R+ SG +
Subjt:  DIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEV--TYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSL

Query:  IGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAI
        + +G + + R   +   E  A+   V     +N          ++ ESDA  +V  +
Subjt:  IGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAI

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.5e-0427.4Show/hide
Query:  WRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGF
        W+ P +   K N D +    R+  G+ W+IR+  G+ +  GC + Q    IK  E  A++  ++    W+ G+
Subjt:  WRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIGIGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGF

AT4G29090.1 Ribonuclease H-like superfamily protein1.9e-1131.48Show/hide
Query:  IVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEV-TYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIG
        +V  + W +WK RN+    G   N   ++R    ++EE  I  E  +  + P  N++S   WR PP    K N+DATW  D +  G+GWV+R+  G +  
Subjt:  IVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEV-TYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIG

Query:  IGCKRMQR
        +G + + +
Subjt:  IGCKRMQR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.3e-0622.64Show/hide
Query:  IFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQAS---HPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIGIG
        + W IWK+ N    +  R      +  +A+N  +  ++N +T         A    +  W  P     K N DA+  E   V G+GW++R+  G++I  G
Subjt:  IFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQAS---HPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIGIG

Query:  CKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTD
          + Q     +  E   ++  ++A    + GF       ++ E D   + R I  +S++
Subjt:  CKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGACTTTTAGCAGTGAGGAGCTGGATATAGTAGGGATCATATTTTGGAACATTTGGAAGGCAAGAAATCAGTACAAACAGTCAGGGCTTAGGGTAAACCTCAA
CAATATTATCCGAGCAATTGCTATTAACATGGAAGAATTATTGATCAATAACGAAGTCACCTATTCTTCGCCCCCAATGGAGAACCAGGCGAGTCACCCTCCTTGGAGAT
CGCCTCCTTCAGGTTCATGGAAGTTGAATTCCGACGCCACGTGGTTTGAAGACAGAAAAGTGGGTGGGGTCGGTTGGGTGATCCGTGACTATTCAGGGTCTCTGATTGGG
ATAGGCTGCAAGAGGATGCAAAGAAATTGGGGAATAAAAAATCTCGAAGCTTTTGCTATTCTGGAGGGGGTTAGAGCTTACTTGAATTGGAACACGGGCTTCCCCGAAGA
TCTAAAACTGTCACTGTTGGCAGAGTCTGATGCGAGCGAAGTGGTGAGGGCCATCTATGGTGAGTCTACTGATCTGTCGGAATTGTCCTTGATTTCGTCCACAACCGTTG
ATTTTGGTCTTGGAGAATCTTTCTCCATTGCTAAATGCTCGCGCCTGAGCAATTCTGAAGTCCACTTTGTCGCTAGGGCAAGGGCCATTATTACAGGGATTTCCTGTGGT
TTTTTGGCAGCTCTTTGCTTCCGCCTGTGGAAGATGATGATGCGAGGAGAAGGAATGAGTGTATTCCTTGGTGGTTGGATAGTTATTGTAATGGCAATTTTGGACCACCC
CGATATACAAGGAGCTGACGAAGACAACTGGAGAGAAATCGAGCTGGGAGATGGACCAAAGAGGCGAAACCGGCAAGTGTGTCGGGCCAAGACCGAAGGGGTCGGGCTTG
CCCGACCCCCTGCTCGGCCCGCTCGCGCGGGGCGAGCCCATCCGACTTGGCTTGGTCCCCACAGCCTCTGGCCGCCTCGGTTCAGCCTGGTTTGTCCCGAAATGCCTCCG
AATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGACTTTTAGCAGTGAGGAGCTGGATATAGTAGGGATCATATTTTGGAACATTTGGAAGGCAAGAAATCAGTACAAACAGTCAGGGCTTAGGGTAAACCTCAA
CAATATTATCCGAGCAATTGCTATTAACATGGAAGAATTATTGATCAATAACGAAGTCACCTATTCTTCGCCCCCAATGGAGAACCAGGCGAGTCACCCTCCTTGGAGAT
CGCCTCCTTCAGGTTCATGGAAGTTGAATTCCGACGCCACGTGGTTTGAAGACAGAAAAGTGGGTGGGGTCGGTTGGGTGATCCGTGACTATTCAGGGTCTCTGATTGGG
ATAGGCTGCAAGAGGATGCAAAGAAATTGGGGAATAAAAAATCTCGAAGCTTTTGCTATTCTGGAGGGGGTTAGAGCTTACTTGAATTGGAACACGGGCTTCCCCGAAGA
TCTAAAACTGTCACTGTTGGCAGAGTCTGATGCGAGCGAAGTGGTGAGGGCCATCTATGGTGAGTCTACTGATCTGTCGGAATTGTCCTTGATTTCGTCCACAACCGTTG
ATTTTGGTCTTGGAGAATCTTTCTCCATTGCTAAATGCTCGCGCCTGAGCAATTCTGAAGTCCACTTTGTCGCTAGGGCAAGGGCCATTATTACAGGGATTTCCTGTGGT
TTTTTGGCAGCTCTTTGCTTCCGCCTGTGGAAGATGATGATGCGAGGAGAAGGAATGAGTGTATTCCTTGGTGGTTGGATAGTTATTGTAATGGCAATTTTGGACCACCC
CGATATACAAGGAGCTGACGAAGACAACTGGAGAGAAATCGAGCTGGGAGATGGACCAAAGAGGCGAAACCGGCAAGTGTGTCGGGCCAAGACCGAAGGGGTCGGGCTTG
CCCGACCCCCTGCTCGGCCCGCTCGCGCGGGGCGAGCCCATCCGACTTGGCTTGGTCCCCACAGCCTCTGGCCGCCTCGGTTCAGCCTGGTTTGTCCCGAAATGCCTCCG
AATCCCTAA
Protein sequenceShow/hide protein sequence
MAKTFSSEELDIVGIIFWNIWKARNQYKQSGLRVNLNNIIRAIAINMEELLINNEVTYSSPPMENQASHPPWRSPPSGSWKLNSDATWFEDRKVGGVGWVIRDYSGSLIG
IGCKRMQRNWGIKNLEAFAILEGVRAYLNWNTGFPEDLKLSLLAESDASEVVRAIYGESTDLSELSLISSTTVDFGLGESFSIAKCSRLSNSEVHFVARARAIITGISCG
FLAALCFRLWKMMMRGEGMSVFLGGWIVIVMAILDHPDIQGADEDNWREIELGDGPKRRNRQVCRAKTEGVGLARPPARPARAGRAHPTWLGPHSLWPPRFSLVCPEMPP
NP