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Lag0015560 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015560
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPhotosystem II CP47 reaction center protein-like
Genome locationchr12:16215385..16219605
RNA-Seq ExpressionLag0015560
SyntenyLag0015560
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV33773.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]6.3e-0943.56Show/hide
Query:  SKESFNASIRATANPFLVL-PVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAH
        +  S+N S+    N  ++   VTKNG PKIIGT  S+  S + KS G TNLST  ST S +P+G  ND  AS K+ +V   SP P++    Y I+ I A 
Subjt:  SKESFNASIRATANPFLVL-PVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAH

Query:  R
        R
Subjt:  R

GEW20287.1 hypothetical protein [Tanacetum cinerariifolium]2.2e-0640.21Show/hide
Query:  LPVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQG
        L V + GRPK+IGT+ S+S S   K  G  NL T T+  S  P+G + D  AS  + ++GL+  IP++ K EY +RFI A +S     T   P+  G
Subjt:  LPVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQG

KAA0056500.1 photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa]5.2e-1150.56Show/hide
Query:  IKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFSGTSRSSTFSQVP
        +KSA N NLSTLT+TSSI P GCV D  A+C  TVVG A PIP++LK + DI+ I A R HSA     P +E  +    S S  F + P
Subjt:  IKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFSGTSRSSTFSQVP

XP_015960408.1 uncharacterized protein LOC107484311 [Arachis duranensis]5.9e-0741.84Show/hide
Query:  VTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFS
        + K G P ++ +  S+S+S   KSAGN N STLT   S  P+G   D  ASCKV ++G  S I N L  +  IR I   +SH+AL     PM Q   S
Subjt:  VTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFS

XP_035845326.1 protein FAR1-RELATED SEQUENCE 2-like [Helianthus annuus]4.1e-0850.56Show/hide
Query:  LVLPVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSAL
        + L V KNG P++IGT  SAS S   KS G TNLSTLT   SI+P G + D  A  K   VG  SP PN    EY I+FI A R   AL
Subjt:  LVLPVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSAL

TrEMBL top hitse value%identityAlignment
A0A392PAT4 Uncharacterized protein (Fragment)9.2e-0641.24Show/hide
Query:  PVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGM
        PV +NG P  IG S S+S S + KSAG + LST+TSTSS +P G          V +V L SP  ++ + E  I+   A RS S L  + PP+  G+
Subjt:  PVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGM

A0A5D3DZH8 Photosystem II CP47 reaction center protein-like2.5e-1150.56Show/hide
Query:  IKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFSGTSRSSTFSQVP
        +KSA N NLSTLT+TSSI P GCV D  A+C  TVVG A PIP++LK + DI+ I A R HSA     P +E  +    S S  F + P
Subjt:  IKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFSGTSRSSTFSQVP

A0A699N713 Uncharacterized protein (Fragment)3.2e-0643.4Show/hide
Query:  NSKESFNASIRATANPFLVLPVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAH
        +SK S   SI    +PF      + G PKI GT LS+S S + KSAGN NL T TS  S +P    ND  A   + +VGL     N+   EY +RFI A 
Subjt:  NSKESFNASIRATANPFLVLPVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAH

Query:  RSHSAL
        RS  AL
Subjt:  RSHSAL

A0A699SB53 Uncharacterized protein3.2e-0635.71Show/hide
Query:  SIRATANPFLVL---PVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSA
        ++R  ++P+  +   PV KN  PKI GT  SAS+    KS G  N  TLT+TSS+ P+G   D  +S +V  VG++S   ++ + +  +R + A +S  A
Subjt:  SIRATANPFLVL---PVTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSA

Query:  LLTFCPPMEQGM
          T  P   QG+
Subjt:  LLTFCPPMEQGM

A0A6P4D3L8 uncharacterized protein LOC1074843112.9e-0741.84Show/hide
Query:  VTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFS
        + K G P ++ +  S+S+S   KSAGN N STLT   S  P+G   D  ASCKV ++G  S I N L  +  IR I   +SH+AL     PM Q   S
Subjt:  VTKNGRPKIIGTSLSASQSNMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATCTTCCATAAAAACTTCCAACGTTCGCTCCACCATATCTGAGAATATTGCCATCATACACCTTTGGAAGGTGGCTGGAGTGTTACAGAGTCCAAATGGCAT
TCTTCGAAAAGCGAACGTCCTATGTTCTGGTAACGATTTGAGTTCTAATTATGGAGGTTTAATCATGGATGGCTGCAGCGGCTTGATCTCTTCTTGGCTTAACTCCAAGG
AATCTTTCAATGCTTCTATTCGTGCTACTGCAAATCCATTTTTGGTCCTACCAGTCACTAAGAATGGTCGACCTAAGATAATTGGCACTTCTTTGTCTGCTTCACAGTCC
AATATGATAAAGTCTGCTGGAAATACGAACTTGTCCACCTTGACTAGTACATCCTCTATTTTACCAATGGGATGTGTTAATGATTTCTTCGCTAGTTGCAAGGTGACAGT
TGTTGGTCTGGCTTCTCCTATACCTAACTATTTGAAAACTGAATATGACATCAGATTTATATTTGCTCACAGATCGCATAGTGCTCTGCTGACGTTCTGTCCTCCTATGG
AGCAAGGGATGTTTTCAGGAACTTCACGTAGTTCGACATTTTCTCAAGTGCCTCCACCAACGGTAACTGCTTTGCACTTTTCCTTGCTTTCACGGTTTAGCTCAAACTGT
GGAGCTTCTATCGGTGGCTTAAGTATTCCTGGATTCAGGTTTGGAAAACTGGTAAGGGATAATCCCTTATTACTCTATTGCGGTCTTCTGCAATATAGATTGGATTTTCA
TTTGGTGGCAATGGTGAAACTGGAGGTGCTGGAGGTATTCTCCAACCATTCTAATCCATTCCACGATTTTGTGGGTCAACAAGAGGATCGACTCTGGGTTGGTCCATCGG
AAGTTCTTGTATACAAGCAGCTTCTTCAAGAAGTTCCTGTGCGCTCAACTCTTGTTGTTCCCTCTTCTTTCGCCTCTACTCTTTACGATGACGACGAAAGGATCAAACTC
ACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAATCTTCCATAAAAACTTCCAACGTTCGCTCCACCATATCTGAGAATATTGCCATCATACACCTTTGGAAGGTGGCTGGAGTGTTACAGAGTCCAAATGGCAT
TCTTCGAAAAGCGAACGTCCTATGTTCTGGTAACGATTTGAGTTCTAATTATGGAGGTTTAATCATGGATGGCTGCAGCGGCTTGATCTCTTCTTGGCTTAACTCCAAGG
AATCTTTCAATGCTTCTATTCGTGCTACTGCAAATCCATTTTTGGTCCTACCAGTCACTAAGAATGGTCGACCTAAGATAATTGGCACTTCTTTGTCTGCTTCACAGTCC
AATATGATAAAGTCTGCTGGAAATACGAACTTGTCCACCTTGACTAGTACATCCTCTATTTTACCAATGGGATGTGTTAATGATTTCTTCGCTAGTTGCAAGGTGACAGT
TGTTGGTCTGGCTTCTCCTATACCTAACTATTTGAAAACTGAATATGACATCAGATTTATATTTGCTCACAGATCGCATAGTGCTCTGCTGACGTTCTGTCCTCCTATGG
AGCAAGGGATGTTTTCAGGAACTTCACGTAGTTCGACATTTTCTCAAGTGCCTCCACCAACGGTAACTGCTTTGCACTTTTCCTTGCTTTCACGGTTTAGCTCAAACTGT
GGAGCTTCTATCGGTGGCTTAAGTATTCCTGGATTCAGGTTTGGAAAACTGGTAAGGGATAATCCCTTATTACTCTATTGCGGTCTTCTGCAATATAGATTGGATTTTCA
TTTGGTGGCAATGGTGAAACTGGAGGTGCTGGAGGTATTCTCCAACCATTCTAATCCATTCCACGATTTTGTGGGTCAACAAGAGGATCGACTCTGGGTTGGTCCATCGG
AAGTTCTTGTATACAAGCAGCTTCTTCAAGAAGTTCCTGTGCGCTCAACTCTTGTTGTTCCCTCTTCTTTCGCCTCTACTCTTTACGATGACGACGAAAGGATCAAACTC
ACATAG
Protein sequenceShow/hide protein sequence
MEKSSIKTSNVRSTISENIAIIHLWKVAGVLQSPNGILRKANVLCSGNDLSSNYGGLIMDGCSGLISSWLNSKESFNASIRATANPFLVLPVTKNGRPKIIGTSLSASQS
NMIKSAGNTNLSTLTSTSSILPMGCVNDFFASCKVTVVGLASPIPNYLKTEYDIRFIFAHRSHSALLTFCPPMEQGMFSGTSRSSTFSQVPPPTVTALHFSLLSRFSSNC
GASIGGLSIPGFRFGKLVRDNPLLLYCGLLQYRLDFHLVAMVKLEVLEVFSNHSNPFHDFVGQQEDRLWVGPSEVLVYKQLLQEVPVRSTLVVPSSFASTLYDDDERIKL
T