CuGenDBv2

Gene ID	Lag0015575
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	pentatricopeptide repeat-containing protein At5g47360
Genome location	chr12:16653274..16655907
RNA-Seq Expression	Lag0015575
Synteny	Lag0015575
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579716.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

5.8e-32

51.74

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQK                                                         RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCLVDI MFKVILNLCKE KLAKEALSILGK+ EFHL+A TTMYNL+IR   E  ++  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

KAG7017159.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-32

51.74

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQK                                                         RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCLVDI MFKVILNLCKE KLAKEALSILGK+ EFHL+A TTMYNL+IR   E  ++  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

XP_022928928.1 pentatricopeptide repeat-containing protein At5g47360 [Cucurbita moschata]

6.9e-33

52.91

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQKK                                                        RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCLVDI MFKVILNLCKE KLAKEALSILGK+ EFHL+A TTMYNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

XP_022969835.1 pentatricopeptide repeat-containing protein At5g47360 [Cucurbita maxima]

4.5e-32

51.74

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQK                                                         RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCL+DI MFKVILNLCKE KLAKEALSILGK+ EFHL+A TTMYNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

XP_023551479.1 pentatricopeptide repeat-containing protein At5g47360 [Cucurbita pepo subsp. pepo]

1.7e-31

51.16

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQK                                                         RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        L+FNVIEDYRREGCLVDI MFKVILNLCKE KLAKEALSILG++ EFHL+A TTMYNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LI44 Uncharacterized protein

1.0e-29

49.42

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS    ISTLST  L+T+S +DLFY+HL+K                                                         RA E+IGIN SPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCLVDIRMFK+ILNLCKEAKLAKEALSIL K+ EFHL+A TTMYNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

A0A1S3B4L9 pentatricopeptide repeat-containing protein At5g47360

4.2e-28

47.67

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS    ISTLST  LST+S +DLFY+HL+K                                                         RA E+IGIN SPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCLVDIR+F++ILNLCKEAKL KEALSIL K+ EFHL+A TT+YNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

A0A6J1DNK5 pentatricopeptide repeat-containing protein At5g47360

5.0e-29

47.9

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Query:  EISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPCLLFNV
        +IS LS L LST+S ADLFY+HLQK                                                         RA E+IGI+RSPCLL NV
Subjt:  EISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPCLLFNV

Query:  IEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        IEDYRREGC+VDIRMFKV+LNLCKEAKLA EAL ILGK+ EFHL+A TT+YNL++R  +E  E+  A
Subjt:  IEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

A0A6J1EQI2 pentatricopeptide repeat-containing protein At5g47360

3.3e-33

52.91

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQKK                                                        RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCLVDI MFKVILNLCKE KLAKEALSILGK+ EFHL+A TTMYNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

A0A6J1I125 pentatricopeptide repeat-containing protein At5g47360

2.2e-32

51.74

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Query:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC
        SS   +ISTLSTLQLST+S ADLFY+HLQK                                                         RA E+IG+NRSPC
Subjt:  SSSPSEISTLSTLQLSTISPADLFYNHLQKKQ------------------------------------------------------CRAFEMIGINRSPC

Query:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        LLFNVIEDYRREGCL+DI MFKVILNLCKE KLAKEALSILGK+ EFHL+A TTMYNL+IR   E  E+  A
Subjt:  LLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

SwissProt top hits

e value

%identity

Alignment

Q9LVS3 Pentatricopeptide repeat-containing protein At5g47360

1.9e-09

29.78

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Query:  SRLSSPSSRLLPSRLS--------SPSSRLSSPLLSSPSSRLLPLSSSPSEISTLSTLQLSTISPADLF---------------YNHLQKKQCRAFEMIG
        SRL SPS R  PS++S        S + RL   L    S+    L+S+  ++ +    ++      + F               + H      +A +++ 
Subjt:  SRLSSPSSRLLPSRLS--------SPSSRLSSPLLSSPSSRLLPLSSSPSEISTLSTLQLSTISPADLF---------------YNHLQKKQCRAFEMIG

Query:  INRSPCLLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        I   P L+  VIE YR+E C V+++  +++L LC +A LA EAL +L K  EF++ A T  YNL+IR   +  +L++A
Subjt:  INRSPCLLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

Arabidopsis top hits

e value

%identity

Alignment

AT5G47360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.4e-10

29.78

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Query:  SRLSSPSSRLLPSRLS--------SPSSRLSSPLLSSPSSRLLPLSSSPSEISTLSTLQLSTISPADLF---------------YNHLQKKQCRAFEMIG
        SRL SPS R  PS++S        S + RL   L    S+    L+S+  ++ +    ++      + F               + H      +A +++ 
Subjt:  SRLSSPSSRLLPSRLS--------SPSSRLSSPLLSSPSSRLLPLSSSPSEISTLSTLQLSTISPADLF---------------YNHLQKKQCRAFEMIG

Query:  INRSPCLLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA
        I   P L+  VIE YR+E C V+++  +++L LC +A LA EAL +L K  EF++ A T  YNL+IR   +  +L++A
Subjt:  INRSPCLLFNVIEDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLA

Sequences

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CDS sequence

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ATGCCTCTTTCCCCCTCTCGATCTCCCTCTCGTCTTTCTTGTCCTCCTCTCGTCTTCTCCCCCTCTCGTCTTTCTTCTCCTTCCTCTCGTCTTCTCCCCTCTCGTCTTTC
TTCTCCTTCCTCTCGTCTTTCTTCTCCCCTCTTGTCTTCTCCTTCCTCTCGTCTTCTCCCCCTCTCGTCTTCTCCTTCAGAGATCTCCACCTTATCTACCTTGCAGTTAA
GTACAATCTCTCCTGCTGATCTATTCTACAACCATCTGCAGAAAAAACAATGTAGAGCTTTTGAAATGATTGGAATTAATCGAAGCCCATGCTTGCTTTTTAATGTTATT
GAAGATTATAGAAGGGAGGGTTGCCTTGTTGATATTAGGATGTTTAAGGTTATTTTAAATTTGTGTAAAGAAGCCAAGCTTGCCAAAGAGGCTTTGTCGATATTAGGGAA
AGTGCGTGAATTTCATTTGCAGGCTGGCACTACAATGTATAATCTGATTATAAGGTGGCTTGTGGAGAGCAAAGAATTGTCTCTTGCAAGTTTCACTGAATTTACTGAAG
AATCAAAAGTTGATAAGCTGCTGGGTGGTGGAATAGGTGGAGTGCAGCTGCCAGGTAGTTGGACACATGATTGGATTCTGGAACTAGAAGGATAG

mRNA sequence

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Protein sequence

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MPLSPSRSPSRLSCPPLVFSPSRLSSPSSRLLPSRLSSPSSRLSSPLLSSPSSRLLPLSSSPSEISTLSTLQLSTISPADLFYNHLQKKQCRAFEMIGINRSPCLLFNVI
EDYRREGCLVDIRMFKVILNLCKEAKLAKEALSILGKVREFHLQAGTTMYNLIIRWLVESKELSLASFTEFTEESKVDKLLGGGIGGVQLPGSWTHDWILELEG

Lag0015575 (gene) of Sponge gourd (AG-4) v1 genome