; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015596 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015596
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPolypyrimidine tract-binding protein-like protein 3
Genome locationchr12:17268550..17272890
RNA-Seq ExpressionLag0015596
SyntenyLag0015596
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER39951.1 polypyrimidine tract-binding protein-like protein [Striga asiatica]2.7e-0574.36Show/hide
Query:  SLHTLDELQVNYNNKCSRDFTNPNLPSEPKGQSSQMNNA
        S  +LDELQVNYNN+ SRDFTNP+LPSE +G+SSQM NA
Subjt:  SLHTLDELQVNYNNKCSRDFTNPNLPSEPKGQSSQMNNA
XP_022932097.1 polypyrimidine tract-binding protein homolog 3 isoform X1 [Cucurbita moschata]4.7e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
XP_022932099.1 polypyrimidine tract-binding protein homolog 3 isoform X2 [Cucurbita moschata]4.7e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
XP_023525437.1 polypyrimidine tract-binding protein homolog 3 isoform X1 [Cucurbita pepo subsp. pepo]4.7e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
XP_023525438.1 polypyrimidine tract-binding protein homolog 3 isoform X2 [Cucurbita pepo subsp. pepo]4.7e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
TrEMBL top hitse value%identityAlignment
A0A5A7Q7E4 Polypyrimidine tract-binding protein-like protein1.3e-0574.36Show/hide
Query:  SLHTLDELQVNYNNKCSRDFTNPNLPSEPKGQSSQMNNA
        S  +LDELQVNYNN+ SRDFTNP+LPSE +G+SSQM NA
Subjt:  SLHTLDELQVNYNNKCSRDFTNPNLPSEPKGQSSQMNNA
A0A6J1EVP5 polypyrimidine tract-binding protein homolog 3 isoform X12.3e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
A0A6J1EW29 polypyrimidine tract-binding protein homolog 3 isoform X22.3e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
A0A6J1I765 polypyrimidine tract-binding protein homolog 3 isoform X22.3e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
A0A6J1I9W1 polypyrimidine tract-binding protein homolog 3 isoform X12.3e-0590.32Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
        LDELQVNYNN+ SRDFTNPNLPSEPKG+SSQ
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSSQ
SwissProt top hitse value%identityAlignment
Q6ICX4 Polypyrimidine tract-binding protein homolog 34.9e-0576.67Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
        L+ELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
Arabidopsis top hitse value%identityAlignment
AT1G43190.1 polypyrimidine tract-binding protein 33.5e-0676.67Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
        L+ELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
AT1G43190.2 polypyrimidine tract-binding protein 33.5e-0676.67Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
        L+ELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
AT1G43190.3 polypyrimidine tract-binding protein 33.5e-0676.67Show/hide
Query:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS
        L+ELQVNYNN  SRD+TNPNLP+E KG+SS
Subjt:  LDELQVNYNNKCSRDFTNPNLPSEPKGQSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTGGTGCAAATGACAACACCACCATCTATTCCCTCGTATCCAGGCCATCTCCAATTGTAGCATCAAACTCCCCACAGACGGCGCCAACTGCCAAAATTTGGCC
AAGGGATGGGAAAGACTCACTAAACGCGTCTGCAGAAGTGGTCTCTCTCGACGCAGCTAACCACCGCGTCGAGAGAGACAGTTTTAAATCGGTCTTTGCCGACGTCATTA
GTGACGGCGTCGGCAGAGACATCATCTCTCTCGACGCGTACAATGAAGGCGTCGAGAGAGAGGCTCTACCGACACCGTCACTAACGACGTCGGCAGAGACCCTGTTTAAA
GCCCTAGCCCCAATCTTCTTTTCCTCCTATTCGACAAAGAGCAAAGACCCCCCCGGTCTGCGATCTTCCTCCACTGCCGTCTGCGCCCTATTCCTCCCGTCGCCTCTTCT
CGCCTCCGGCCGCCTGTTTTCCCTCTATCTCCGTTGTCTGCAACATCCCGCCGGCGACCGCCTCCCGCCCTGTCAAATCGTTTCCCGTGATTTCACCGTCTCCGCTCTCT
CTGTTTTTCTACAGCTTGCTGAGCGGCAAAAATCTTCGTCTTCTTGCCCCCTCTCTCTCGAAGGCTCGACCAGGGAGAAGAAGAAACCTACTCCTGAAGATCCAGGCATG
AAGAATATGGCCACGAGTCTTCACACTCTTGATGAGTTACAAGTGAACTACAATAACAAGTGTTCAAGGGATTTCACAAATCCTAACCTGCCTTCTGAACCAAAAGGTCA
GTCATCACAAATGAATAATGCTTGTGGACAAATCAGTCCAAGGCAAATCTCTGTTACTCTAGAATCAGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTGGTGCAAATGACAACACCACCATCTATTCCCTCGTATCCAGGCCATCTCCAATTGTAGCATCAAACTCCCCACAGACGGCGCCAACTGCCAAAATTTGGCC
AAGGGATGGGAAAGACTCACTAAACGCGTCTGCAGAAGTGGTCTCTCTCGACGCAGCTAACCACCGCGTCGAGAGAGACAGTTTTAAATCGGTCTTTGCCGACGTCATTA
GTGACGGCGTCGGCAGAGACATCATCTCTCTCGACGCGTACAATGAAGGCGTCGAGAGAGAGGCTCTACCGACACCGTCACTAACGACGTCGGCAGAGACCCTGTTTAAA
GCCCTAGCCCCAATCTTCTTTTCCTCCTATTCGACAAAGAGCAAAGACCCCCCCGGTCTGCGATCTTCCTCCACTGCCGTCTGCGCCCTATTCCTCCCGTCGCCTCTTCT
CGCCTCCGGCCGCCTGTTTTCCCTCTATCTCCGTTGTCTGCAACATCCCGCCGGCGACCGCCTCCCGCCCTGTCAAATCGTTTCCCGTGATTTCACCGTCTCCGCTCTCT
CTGTTTTTCTACAGCTTGCTGAGCGGCAAAAATCTTCGTCTTCTTGCCCCCTCTCTCTCGAAGGCTCGACCAGGGAGAAGAAGAAACCTACTCCTGAAGATCCAGGCATG
AAGAATATGGCCACGAGTCTTCACACTCTTGATGAGTTACAAGTGAACTACAATAACAAGTGTTCAAGGGATTTCACAAATCCTAACCTGCCTTCTGAACCAAAAGGTCA
GTCATCACAAATGAATAATGCTTGTGGACAAATCAGTCCAAGGCAAATCTCTGTTACTCTAGAATCAGCCTGA
Protein sequenceShow/hide protein sequence
MPSGANDNTTIYSLVSRPSPIVASNSPQTAPTAKIWPRDGKDSLNASAEVVSLDAANHRVERDSFKSVFADVISDGVGRDIISLDAYNEGVEREALPTPSLTTSAETLFK
ALAPIFFSSYSTKSKDPPGLRSSSTAVCALFLPSPLLASGRLFSLYLRCLQHPAGDRLPPCQIVSRDFTVSALSVFLQLAERQKSSSSCPLSLEGSTREKKKPTPEDPGM
KNMATSLHTLDELQVNYNNKCSRDFTNPNLPSEPKGQSSQMNNACGQISPRQISVTLESA