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Lag0015616 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015616
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr12:17716084..17718205
RNA-Seq ExpressionLag0015616
SyntenyLag0015616
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038028.1 polyprotein [Cucumis melo var. makuwa]1.7e-1868.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.7e-1868.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
KAE8653135.1 hypothetical protein Csa_020003 [Cucumis sativus]1.0e-1870.31Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYEFILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
TYK28077.1 polyprotein [Cucumis melo var. makuwa]1.7e-1868.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.7e-1868.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
TrEMBL top hitse value%identityAlignment
A0A0A0LWK6 Uncharacterized protein4.9e-1970.31Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYEFILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
A0A5A7SS94 Retrotransposable element Tf28.4e-1968.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
A0A5A7TFI6 Retrotransposable element Tf28.4e-1968.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
A0A5A7UVN1 Retrotransposable element Tf28.4e-1968.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
A0A5D3C4Q3 Retrotransposable element Tf28.4e-1968.75Show/hide
Query:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
        ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+ DKNDPSKI YSK +IF+ L P++W Q +
Subjt:  MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQAL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCCATCAGGCTTTAACTTCATGCCTGAAGACCTTCAAAAAACAAGAACCTTTTATGAGTTTATTCTTGTTGACACCAAGTCAGCAGAAATAACCCATATTACAGA
CAAGAACGATCCATCTAAGATTGCTTATTCCAAATTCAAAATCTTCAAAGCCTTACATCCAACCCATTGGAATCAAGCCCTAGCACAGACAACCTCTAATGCAGACTTCC
AGAGGATCCTACAAATGGCAGCCTCCACTACAAGCGAGTCACCTGCTTCTTCTGCACAAGGAGAAGAGAACGGACCAGACTACGATCTGGATGATCCATACCTCGACTCA
CAACCCATCTGCTTCTGCGCCTCAGCCACTCACACACGCTGCGAGAAACGTCAATGCCGCCGCCCTCTCTCCGTGAGATCTCTCTCTCGTTTCGATCTCTTCTTTAGATC
GACTGACAGAGCTACCGCCGGCAATCGGAAAACCAATCACCACTGCCACACGCTTGAACTAATAGCTTCCCCGACGTCGACACGAGAGCAGATTAGCCAGCGGTTCATCT
TTTCCTCTTGGTCGATCGTCTTCTCCGACAGTACAGTAAGTCGCAGACGAGTGGCGGCAGTGACTTCTCTGGTTGTTTTGGCGTGGGTTTCGACGACATTGCGTAGACTC
GGCGGTTTTGGGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATCCATCAGGCTTTAACTTCATGCCTGAAGACCTTCAAAAAACAAGAACCTTTTATGAGTTTATTCTTGTTGACACCAAGTCAGCAGAAATAACCCATATTACAGA
CAAGAACGATCCATCTAAGATTGCTTATTCCAAATTCAAAATCTTCAAAGCCTTACATCCAACCCATTGGAATCAAGCCCTAGCACAGACAACCTCTAATGCAGACTTCC
AGAGGATCCTACAAATGGCAGCCTCCACTACAAGCGAGTCACCTGCTTCTTCTGCACAAGGAGAAGAGAACGGACCAGACTACGATCTGGATGATCCATACCTCGACTCA
CAACCCATCTGCTTCTGCGCCTCAGCCACTCACACACGCTGCGAGAAACGTCAATGCCGCCGCCCTCTCTCCGTGAGATCTCTCTCTCGTTTCGATCTCTTCTTTAGATC
GACTGACAGAGCTACCGCCGGCAATCGGAAAACCAATCACCACTGCCACACGCTTGAACTAATAGCTTCCCCGACGTCGACACGAGAGCAGATTAGCCAGCGGTTCATCT
TTTCCTCTTGGTCGATCGTCTTCTCCGACAGTACAGTAAGTCGCAGACGAGTGGCGGCAGTGACTTCTCTGGTTGTTTTGGCGTGGGTTTCGACGACATTGCGTAGACTC
GGCGGTTTTGGGCAGTAG
Protein sequenceShow/hide protein sequence
MYPSGFNFMPEDLQKTRTFYEFILVDTKSAEITHITDKNDPSKIAYSKFKIFKALHPTHWNQALAQTTSNADFQRILQMAASTTSESPASSAQGEENGPDYDLDDPYLDS
QPICFCASATHTRCEKRQCRRPLSVRSLSRFDLFFRSTDRATAGNRKTNHHCHTLELIASPTSTREQISQRFIFSSWSIVFSDSTVSRRRVAAVTSLVVLAWVSTTLRRL
GGFGQ