; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015620 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015620
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionserine/arginine-rich splicing factor 4-like isoform X6
Genome locationchr12:17831265..17832094
RNA-Seq ExpressionLag0015620
SyntenyLag0015620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8284803.1 hypothetical protein D5F01_LYC16241 [Larimichthys crocea]3.3e-0549.43Show/hide
Query:  DRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDH-------QTDHPRRSTSQQIDHPRRSTSQQADHPRRSTSHN
        D  RRS  +Q DH RRS  +Q DH RRS  +Q DH RRS  +Q DH       Q DH RRS  +Q DH RRS  +Q DH RRS   +
Subjt:  DRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDH-------QTDHPRRSTSQQIDHPRRSTSQQADHPRRSTSHN

XP_013864908.1 PREDICTED: serine/arginine-rich splicing factor 4-like isoform X6 [Austrofundulus limnaeus]7.3e-0530.85Show/hide
Query:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNM--SIQEIIK
        + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH  RS S+  DH  RS S+  DH  RS S +   + + +  
Subjt:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNM--SIQEIIK

Query:  PADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK
          D +S+ +     RS    ++SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++ S D  S+
Subjt:  PADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK

XP_013864910.1 PREDICTED: serine/arginine-rich splicing factor 4-like isoform X8 [Austrofundulus limnaeus]6.1e-0431.18Show/hide
Query:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPA
        + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH  RS S+  DH  RS S+  DH  RS S            
Subjt:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPA

Query:  DRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK
        D +S+ +     RS    ++SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++ S D  S+
Subjt:  DRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK

TrEMBL top hitse value%identityAlignment
A0A1B6DSP5 Uncharacterized protein8.7e-0433.33Show/hide
Query:  RSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINKSVDRSSNR-------SSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKI
        + T+ QA   +     N + ++  K  D ++KKI K     +KK+NK  D  + +        ++K NK  D  +KK+NK     +KK+NK  D  +KK 
Subjt:  RSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINKSVDRSSNR-------SSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKI

Query:  NKSADRSSEKINKSADRSSKKINKPTGRSSKKINKSQH
        NK  D+ ++K+NK  D  +KK+NK     +KK NK +H
Subjt:  NKSADRSSEKINKSADRSSKKINKPTGRSSKKINKSQH

A0A2I4BB01 serine/arginine-rich splicing factor 4-like isoform X83.0e-0431.18Show/hide
Query:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPA
        + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH  RS S+  DH  RS S+  DH  RS S            
Subjt:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPA

Query:  DRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK
        D +S+ +     RS    ++SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++ S D  S+
Subjt:  DRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK

A0A2I4BB16 serine/arginine-rich splicing factor 4-like isoform X63.5e-0530.85Show/hide
Query:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNM--SIQEIIK
        + + RSR  TS+  DH  RS S+  DH  RS S+  DH  RS S+  DH +       DH  RS S+  DH  RS S+  DH  RS S +   + + +  
Subjt:  KPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQT-------DHPRRSTSQQIDHPRRSTSQQADHPRRSTSHNM--SIQEIIK

Query:  PADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK
          D +S+ +     RS    ++SV RS + S   +++S D S + +++    +S+ +++  D S + ++ S D +S  ++ S D  S+
Subjt:  PADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSEKINKSADRSSK

A0A6G0I0G4 Uncharacterized protein1.6e-0549.43Show/hide
Query:  DRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDH-------QTDHPRRSTSQQIDHPRRSTSQQADHPRRSTSHN
        D  RRS  +Q DH RRS  +Q DH RRS  +Q DH RRS  +Q DH       Q DH RRS  +Q DH RRS  +Q DH RRS   +
Subjt:  DRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDH-------QTDHPRRSTSQQIDHPRRSTSQQADHPRRSTSHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGAT
CATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAA
GCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACA
AGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCG
ATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACC
GATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAG
AAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAAGAAGTAGAAGAGGAAAATGATGGATTAGAGGAGAAACTTCAACCCAAGAGGAAGAGAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGAT
CATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAA
GCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACA
AGTCAACAGATCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAAGCCAGCAGACCG
ATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACC
GATCATCCAAGAAGATCAACAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGATCGATCATCTGAG
AAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTCACAACATGTCGATCCAAGAGATCATTAA
Protein sequenceShow/hide protein sequence
MVEEVEEENDGLEEKLQPKRKRSQPTDQEDQQVNRPIIQEDQQANKPIRQIIKPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTSQQTDHPRRSTSQQTDHQTDHPRRST
SQQIDHPRRSTSQQADHPRRSTSHNMSIQEIIKPADRSSKKIIKPTGRSSKKINKSVDRSSNRSSEKINKSADRSSKKINKPIGRSSKKINKPTDRSSKKINKSADRSSE
KINKSADRSSKKINKPTGRSSKKINKSQHVDPRDH