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Lag0015645 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015645
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:18496063..18496661
RNA-Seq ExpressionLag0015645
SyntenyLag0015645
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABB46931.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]6.0e-0530.25Show/hide
Query:  DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK--------------DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKII
        D I W P+K G F+V+SAYHLA       E S S    +S  W ++WK              + DPK I   +++    E+      +LW IW+ +N+I+
Subjt:  DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK--------------DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKII

Query:  HNNSIPTTESLQIYIEANI
        H    P     + +IE+ +
Subjt:  HNNSIPTTESLQIYIEANI

EEC68887.1 hypothetical protein OsI_37529 [Oryza sativa Indica Group]1.5e-0832.43Show/hide
Query:  KNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPK--EIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTT
        ++  D I W P+K G F+V+SAY LA   +   E+S S     +  W+ IWK + P+  +I+AW + +     +      LW  W  +N++IH  S P T
Subjt:  KNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPK--EIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTT

Query:  ESLQIYIEANI
        E+ Q +I++ +
Subjt:  ESLQIYIEANI

KAE8774248.1 putative calcium-binding protein CML8 [Hordeum vulgare]3.2e-0633.64Show/hide
Query:  TGKKNARDEITWFPNKKGTFTVKSAYHLAKYH---IFGLEASQSDRRRSSLFWKSIWKDRDPK--EIWAW-MIDNLSKEEIERGATILWSIWNFKNKIIH
        T  +   D ++WFP K G F+V+SAY LA Y     FG  AS S        W ++WK   P+  +I AW ++ N + E  +    ++W IW  +    H
Subjt:  TGKKNARDEITWFPNKKGTFTVKSAYHLAKYH---IFGLEASQSDRRRSSLFWKSIWKDRDPK--EIWAW-MIDNLSKEEIERGATILWSIWNFKNKIIH

Query:  NNSIPTT
           IP T
Subjt:  NNSIPTT

XP_009346162.1 PREDICTED: uncharacterized protein LOC103937909 [Pyrus x bretschneideri]4.6e-0533.02Show/hide
Query:  RDEITWFPNKKGTFTVKSAYHLAKYHIFG---LEASQSDRRRSSLFWKSIWKDRDPKEI------------------WA-WMIDNLSKEEIERGATILWS
        RD++ W  +KKG FTVK+AYH+A+  +     L +S S     ++ W +IWK   P ++                  WA  M+ NL K + E    +LW+
Subjt:  RDEITWFPNKKGTFTVKSAYHLAKYHIFG---LEASQSDRRRSSLFWKSIWKDRDPKEI------------------WA-WMIDNLSKEEIERGATILWS

Query:  IWNFKN
        IW  KN
Subjt:  IWNFKN

XP_030964218.1 uncharacterized protein LOC115985418 [Quercus lobata]5.4e-0630.51Show/hide
Query:  MPTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHI-FGLEASQSDRRRSSLFWKSIWKDRDPKEIWA---------------------WMIDNLSKEEIE
        +P  +++  D ITW  NK G FT+KSAY +A   +  G  A  S+   S     ++W+    K++WA                     +++D LS EE+E
Subjt:  MPTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHI-FGLEASQSDRRRSSLFWKSIWKDRDPKEIWA---------------------WMIDNLSKEEIE

Query:  RGATILWSIWNFKNKIIH
              W IWN +N +IH
Subjt:  RGATILWSIWNFKNKIIH

TrEMBL top hitse value%identityAlignment
A0A2N9F775 Reverse transcriptase domain-containing protein1.4e-0427.82Show/hide
Query:  MPTGKKNARDEITWFPNKKGTFTVKSAYHLA-KYHIFGLEASQSDRRRSSLFWK------SIWKDRDPKEIWAWMIDNLSK-------------------
        +P       D + W  +  G FTVKSAY LA       +  S S   +   FWK      ++W  +    +WA +   LSK                   
Subjt:  MPTGKKNARDEITWFPNKKGTFTVKSAYHLA-KYHIFGLEASQSDRRRSSLFWK------SIWKDRDPKEIWAWMIDNLSK-------------------

Query:  --EEIERGATILWSIWNFKNKIIHNNSIPTTES
          E IE  A   W+IW  +NK +H N +PT ++
Subjt:  --EEIERGATILWSIWNFKNKIIHNNSIPTTES

A0A7N2L5N1 Uncharacterized protein1.3e-0528.46Show/hide
Query:  PTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDP-----------------KEIWA------------------
        P     ARD + W  NK  TF+VK+AYH+A           S  R     WK IW    P                 + +WA                  
Subjt:  PTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDP-----------------KEIWA------------------

Query:  ---WMIDNLSKEEIERGATILWSIWNFKNK
           +M+ +L + ++ER AT+ WSIWN +NK
Subjt:  ---WMIDNLSKEEIERGATILWSIWNFKNK

B8BN96 Reverse transcriptase domain-containing protein7.4e-0932.43Show/hide
Query:  KNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPK--EIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTT
        ++  D I W P+K G F+V+SAY LA   +   E+S S     +  W+ IWK + P+  +I+AW + +     +      LW  W  +N++IH  S P T
Subjt:  KNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPK--EIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTT

Query:  ESLQIYIEANI
        E+ Q +I++ +
Subjt:  ESLQIYIEANI

Q33AJ4 Retrotransposon protein, putative, unclassified2.9e-0530.25Show/hide
Query:  DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK--------------DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKII
        D I W P+K G F+V+SAYHLA       E S S    +S  W ++WK              + DPK I   +++    E+      +LW IW+ +N+I+
Subjt:  DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK--------------DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKII

Query:  HNNSIPTTESLQIYIEANI
        H    P     + +IE+ +
Subjt:  HNNSIPTTESLQIYIEANI

Q8S5K1 Putative retroelement2.9e-0530.25Show/hide
Query:  DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK--------------DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKII
        D I W P+K G F+V+SAYHLA       E S S    +S  W ++WK              + DPK I   +++    E+      +LW IW+ +N+I+
Subjt:  DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK--------------DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKII

Query:  HNNSIPTTESLQIYIEANI
        H    P     + +IE+ +
Subjt:  HNNSIPTTESLQIYIEANI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCACGGGAAAGAAGAACGCAAGAGATGAAATAACTTGGTTCCCAAACAAGAAAGGCACCTTCACGGTGAAAAGTGCCTATCACCTAGCCAAATATCACATTTTCGG
GCTAGAGGCGTCTCAATCAGACAGAAGGAGATCTTCTTTGTTTTGGAAATCCATATGGAAAGATCGGGATCCAAAAGAGATTTGGGCGTGGATGATCGACAATCTATCGA
AGGAAGAAATTGAAAGGGGAGCGACAATTTTATGGAGCATATGGAATTTCAAAAACAAGATAATTCACAACAATTCTATCCCAACAACAGAATCCTTGCAAATTTACATT
GAAGCGAATATTACGGAGCGAACTCTTACCTTTGAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCACGGGAAAGAAGAACGCAAGAGATGAAATAACTTGGTTCCCAAACAAGAAAGGCACCTTCACGGTGAAAAGTGCCTATCACCTAGCCAAATATCACATTTTCGG
GCTAGAGGCGTCTCAATCAGACAGAAGGAGATCTTCTTTGTTTTGGAAATCCATATGGAAAGATCGGGATCCAAAAGAGATTTGGGCGTGGATGATCGACAATCTATCGA
AGGAAGAAATTGAAAGGGGAGCGACAATTTTATGGAGCATATGGAATTTCAAAAACAAGATAATTCACAACAATTCTATCCCAACAACAGAATCCTTGCAAATTTACATT
GAAGCGAATATTACGGAGCGAACTCTTACCTTTGAAAATTAG
Protein sequenceShow/hide protein sequence
MPTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTTESLQIYI
EANITERTLTFEN