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Lag0015646 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015646
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:18536703..18537124
RNA-Seq ExpressionLag0015646
SyntenyLag0015646
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.1e-1236.3Show/hide
Query:  DNAPKAIKDFLQSVLPTENSGIVYALIQANNFELMTS--------------------------DRCDHIEV---------ISVFP---PRQPKDWLESVE
        +  PKAI+D+ Q  LP    GI+   I  NNFEL                             + C  +++         + +FP     + KDWLE++ 
Subjt:  DNAPKAIKDFLQSVLPTENSGIVYALIQANNFELMTS--------------------------DRCDHIEV---------ISVFP---PRQPKDWLESVE

Query:  PGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR
        P SI+TW+ LAQAF  K+FPPAK+ +LRTEIGTFR
Subjt:  PGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]7.9e-1134.04Show/hide
Query:  MAHQQDNA-PKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKD
        MA  + NA P+ +KD+++ ++    SGI    I ANNFEL                          M  + CD I++         + +FP     + + 
Subjt:  MAHQQDNA-PKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKD

Query:  WLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR
        WL+S++PGSI++W ++A+ F  KFFPPAKT +LR+EIG FR
Subjt:  WLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR

XP_023886157.1 uncharacterized protein LOC111998291 [Quercus suber]9.3e-1244.79Show/hide
Query:  DNAPKAIKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVFPPRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTF
        D   KA++D+    +    S I    IQANNFE+ ++     I++I      + K WL S+ PG I+TW+ELAQ F  K+FPPAKTTKLR +I TF
Subjt:  DNAPKAIKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVFPPRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTF

XP_023929660.1 uncharacterized protein LOC112040975 [Quercus suber]4.6e-1133.33Show/hide
Query:  MAHQQDNA-PKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKD
        MA  + NA P+ +KD+++ ++    SGI +  I ANNFEL                          M  + CD +++         + +FP     + + 
Subjt:  MAHQQDNA-PKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKD

Query:  WLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR
        WL+S++PGSI++W ++A+ F  KFFPPAKT +LR+EIG FR
Subjt:  WLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR

XP_030923419.1 uncharacterized protein LOC115950351 [Quercus lobata]3.5e-1133.33Show/hide
Query:  MAHQQDNA-PKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKD
        MA+ + NA P+ +KD++Q ++    SG+    I ANNFEL                          M  + CD +++         + +FP     + + 
Subjt:  MAHQQDNA-PKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKD

Query:  WLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR
        WL+S++PGSI++W E+A+ F  KFFPPAKT +LR+EIG F+
Subjt:  WLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR

TrEMBL top hitse value%identityAlignment
A0A1S4ADQ4 uncharacterized protein LOC1077965392.6e-0736.46Show/hide
Query:  APKAIKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVF--PPRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTF
        A + ++D+ +       S +  + + ANNF++ T      I+   +F    R  K WL S+  GSI+TWD++ Q F  K+F PAKTTKLR +I  F
Subjt:  APKAIKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVF--PPRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTF

A0A1U7YSM1 uncharacterized protein LOC1045864892.7e-0934.21Show/hide
Query:  PKAIKDFLQSVLPTENSGIVYALIQANNFELM---------------------TSDRCDHIEVISVFPPRQPKDWLESVEPGSISTWDELAQAFRTKFFP
        P+ + D+ +  L    S IV   I ANNFE+                       S   + +E+   F     K WL S+  GSI+TWDE+A  F +K+FP
Subjt:  PKAIKDFLQSVLPTENSGIVYALIQANNFELM---------------------TSDRCDHIEVISVFPPRQPKDWLESVEPGSISTWDELAQAFRTKFFP

Query:  PAKTTKLRTEIGTF
        P+KT K+R +I TF
Subjt:  PAKTTKLRTEIGTF

A0A2I4F4C8 uncharacterized protein LOC1089953734.7e-0932.12Show/hide
Query:  QQDNAPKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKDWLES
        Q D  P+ +KD+++ V+    SGI    I ANNFEL                          M    CD +++         + +FP     + + WL+S
Subjt:  QQDNAPKAIKDFLQSVLPTENSGIVYALIQANNFEL--------------------------MTSDRCDHIEV---------ISVFP---PRQPKDWLES

Query:  VEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR
        ++ GSI++W ++A+ F  KFFPPAKTT+LR+EI  F+
Subjt:  VEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR

A0A5B6W500 RING-H2 finger protein ATL634.4e-0737.36Show/hide
Query:  IKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVFPPR-QPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTF
        + D++   L    S I+   I ANNFE+  S+    ++ +  F  R + K WL S+  GSI+TW ++ + F  K+F PAK  KLR EI +F
Subjt:  IKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVFPPR-QPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTF

A0A699H0X5 Reverse transcriptase domain-containing protein2.6e-0739.22Show/hide
Query:  APKAIKDFLQSVLPTENSG--IVYALIQANNFELMTS---DRCDHIEVISVFP---PRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIG
        A + +K+ LQ+  PTE  G  IV   I A NFE+ T+   D  + +  + +FP       + W E   P SI TWD+L   F  +FFPP+KTT L+ EI 
Subjt:  APKAIKDFLQSVLPTENSG--IVYALIQANNFELMTS---DRCDHIEVISVFP---PRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIG

Query:  TF
         F
Subjt:  TF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCACCAACAAGACAACGCTCCCAAAGCAATCAAAGATTTTCTGCAGTCAGTTCTCCCGACTGAAAATTCTGGCATTGTTTATGCCCTGATTCAAGCGAACAACTT
CGAATTAATGACTTCTGACCGATGCGATCATATTGAGGTTATTTCGGTTTTCCCTCCAAGACAACCGAAAGATTGGCTAGAGTCAGTTGAACCTGGAAGCATTAGTACCT
GGGACGAGCTTGCTCAAGCTTTCCGTACAAAATTTTTCCCACCTGCGAAGACCACAAAGCTCCGTACAGAGATTGGAACGTTCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCACCAACAAGACAACGCTCCCAAAGCAATCAAAGATTTTCTGCAGTCAGTTCTCCCGACTGAAAATTCTGGCATTGTTTATGCCCTGATTCAAGCGAACAACTT
CGAATTAATGACTTCTGACCGATGCGATCATATTGAGGTTATTTCGGTTTTCCCTCCAAGACAACCGAAAGATTGGCTAGAGTCAGTTGAACCTGGAAGCATTAGTACCT
GGGACGAGCTTGCTCAAGCTTTCCGTACAAAATTTTTCCCACCTGCGAAGACCACAAAGCTCCGTACAGAGATTGGAACGTTCAGATAG
Protein sequenceShow/hide protein sequence
MAHQQDNAPKAIKDFLQSVLPTENSGIVYALIQANNFELMTSDRCDHIEVISVFPPRQPKDWLESVEPGSISTWDELAQAFRTKFFPPAKTTKLRTEIGTFR